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RunAction.cc
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1 //
2 // ********************************************************************
3 // * License and Disclaimer *
4 // * *
5 // * The Geant4 software is copyright of the Copyright Holders of *
6 // * the Geant4 Collaboration. It is provided under the terms and *
7 // * conditions of the Geant4 Software License, included in the file *
8 // * LICENSE and available at http://cern.ch/geant4/license . These *
9 // * include a list of copyright holders. *
10 // * *
11 // * Neither the authors of this software system, nor their employing *
12 // * institutes,nor the agencies providing financial support for this *
13 // * work make any representation or warranty, express or implied, *
14 // * regarding this software system or assume any liability for its *
15 // * use. Please see the license in the file LICENSE and URL above *
16 // * for the full disclaimer and the limitation of liability. *
17 // * *
18 // * This code implementation is the result of the scientific and *
19 // * technical work of the GEANT4 collaboration. *
20 // * By using, copying, modifying or distributing the software (or *
21 // * any work based on the software) you agree to acknowledge its *
22 // * use in resulting scientific publications, and indicate your *
23 // * acceptance of all terms of the Geant4 Software license. *
24 // ********************************************************************
25 //
26 // This example is provided by the Geant4-DNA collaboration
27 // Any report or published results obtained using the Geant4-DNA software
28 // shall cite the following Geant4-DNA collaboration publication:
29 // Med. Phys. 37 (2010) 4692-4708
30 // and papers
31 // M. Batmunkh et al. J Radiat Res Appl Sci 8 (2015) 498-507
32 // O. Belov et al. Physica Medica 32 (2016) 1510-1520
33 // The Geant4-DNA web site is available at http://geant4-dna.org
34 //
35 // -------------------------------------------------------------------
36 // November 2016
37 // -------------------------------------------------------------------
38 //
41 
42 #include "RunAction.hh"
43 #include "G4Run.hh"
44 #include "TrackingAction.hh"
45 #include "G4ParticleDefinition.hh"
46 #include "G4RunManager.hh"
47 #include "Analysis.hh"
48 #include "G4Threading.hh"
49 #include "CommandLineParser.hh"
50 //#include "NeuronLoadDataFile.hh"
51 #include "Run.hh"
52 #include "Randomize.hh"
53 #include <iomanip>
54 #include "G4UnitsTable.hh"
55 #include "G4SystemOfUnits.hh"
56 #include "G4UImanager.hh"
57 #include "DetectorConstruction.hh"
58 #include "PrimaryGeneratorAction.hh"
59 #include "G4RunManager.hh"
60 #include "G4UImanager.hh"
61 
62 using namespace G4DNAPARSER;
63 
64 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
65 
66 RunAction::RunAction(DetectorConstruction* det, PrimaryGeneratorAction* prim)
67 : G4UserRunAction(), //fpTrackingAction(0), fInitialized(0),
68  fDebug(false),
69 fDetector(det),fPrimary(prim),fRun(0)
70 {
71  //CreateHistogram();
72 }
73 
74 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
75 
76 RunAction::~RunAction()
77 {
78  //delete G4AnalysisManager::Instance();
79 }
80 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
81 
82 G4Run* RunAction::GenerateRun()
83 {
84  fRun = new Run(fDetector);
85  return fRun;
86 }
87 
88 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
89 
90 void RunAction::BeginOfRunAction(const G4Run* /*run*/)
91 {
92 
93 RunInitManager::Instance()->Initialize();
94 
95  // keep run condition
96  if ( fPrimary ) {
97  G4ParticleDefinition* particle
98  = fPrimary->GetParticleGun()->GetParticleDefinition();
99  G4double energy = fPrimary->GetParticleGun()->GetParticleEnergy();
100  fRun->SetPrimary(particle, energy);
101  }
102 
103 /*
104  G4cout << "##### Create analysis manager " << " " << this << G4endl;
105  G4AnalysisManager* analysisManager = G4AnalysisManager::Instance();
106  analysisManager->SetFirstHistoId(1);
107 // if(!analysisManager->IsActive()) {return; }
108 
109  G4cout << "Using " << analysisManager->GetType() <<
110  " analysis manager" << G4endl;
111  // Open an output file
112  analysisManager->OpenFile("neuronG4");
113  G4cout << "\n----> Histogram file is opened in neuronG4" <<
114  "." << analysisManager->GetFileType() << G4endl;
115 // -----------------------------------------------------
116  //Declare ntuples
117  //
118  // Create 1st ntuple (id = 1)
119  //
120  analysisManager->CreateNtuple("ntuple0", "Soma3D");
121  analysisManager->CreateNtupleDColumn("ind");
122  analysisManager->CreateNtupleDColumn("dist");
123  analysisManager->CreateNtupleDColumn("edep");
124  analysisManager->CreateNtupleDColumn("dose");
125  analysisManager->FinishNtuple();
126  //G4cout << "Ntuple-1 created" << G4endl;
127 
128  // Create 2nd ntuple (id = 2)
129  //
130  analysisManager->CreateNtuple("ntuple1", "Dend3D");
131  analysisManager->CreateNtupleDColumn("indD");
132  analysisManager->CreateNtupleDColumn("distD");
133  analysisManager->CreateNtupleDColumn("edepD");
134  analysisManager->CreateNtupleDColumn("doseD");
135  analysisManager->FinishNtuple();
136  //G4cout << "Ntuple-2 created" << G4endl;
137 
138  // Create 3rd ntuple (id = 3)
139  //
140  analysisManager->CreateNtuple("ntuple2", "Axon3D");
141  analysisManager->CreateNtupleDColumn("indA");
142  analysisManager->CreateNtupleDColumn("distA");
143  analysisManager->CreateNtupleDColumn("edepA");
144  analysisManager->CreateNtupleDColumn("doseA");
145  analysisManager->FinishNtuple();
146  //G4cout << "Ntuple-3 created" << G4endl;
147 
148  // Create 4rd ntuple (id = 4)
149  //
150  analysisManager->CreateNtuple("ntuple3", "Outputs per event");
151  analysisManager->CreateNtupleDColumn("EdepAll");
152  analysisManager->CreateNtupleDColumn("EdepMed");
153  analysisManager->CreateNtupleDColumn("EdepSlice");
154  analysisManager->CreateNtupleDColumn("EdepNeuron");
155  analysisManager->FinishNtuple();
156  //G4cout << "Ntuple-4 created" << G4endl;
157  // ............................
158  G4cout << "All Ntuples have been created " << G4endl;
159 */
160 }
161 
162 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
163 
164 void RunAction::EndOfRunAction(const G4Run* /*run*/)
165 {
166 
167  if (isMaster) fRun->EndOfRun();
168 
169 // save histogramms
170 /* G4AnalysisManager* analysisManager = G4AnalysisManager::Instance();
171  //save histograms
172  analysisManager->Write();
173  analysisManager->CloseFile();
174  // Complete clean-up
175  delete G4AnalysisManager::Instance();
176 */
177 
178 }
179 
180 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
181 
182 void RunAction::CreateHistogram()
183 {
184  // Book histograms, ntuple
185 
186  // Create analysis manager
187  // The choice of analysis technology is done via selection of a namespace
188  // in Analysis.hh
189 
190  CommandLineParser* parser = CommandLineParser::GetParser();
191  Command* command(0);
192  if((command = parser->GetCommandIfActive("-out"))==0) return;
193 //
194 // Declare ntuples
195 }
196 
197 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
198 
199 void RunAction::WriteHistogram()
200 {
201  CommandLineParser* parser = CommandLineParser::GetParser();
202  Command* commandLine(0);
203  if((commandLine = parser->GetCommandIfActive("-out"))==0) return;
204 
205  // print histogram statistics
206  //
207  G4AnalysisManager* analysisManager = G4AnalysisManager::Instance();
208  // if(!analysisManager->IsActive()) {return; }
209 
210  // save histograms
211  //
212  analysisManager->Write();
213  analysisManager->CloseFile();
214 
215  if(fDebug)
216  {
217  G4cout << "================ ROOT FILES HAVE BEEN WRITTEN"
218  << G4endl;
219  }
220 }
221 
222 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
223 
224 void RunAction::PrintRunInfo(const G4Run* run)
225 {
226  G4cout << "================ Run is = "
227  << run->GetRunID() << G4endl;
228  G4cout << "================ Run type is = "
229  << G4RunManager::GetRunManager()->GetRunManagerType() << G4endl;
230  G4cout << "================ Event processed = "
231  << run->GetNumberOfEventToBeProcessed() << G4endl;
232  G4cout << "================ Nevent = "
233  << run->GetNumberOfEvent() << G4endl;
234 }
235 
236 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......