G4AdjointCSManager.cc

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#include <fstream>
#include <iomanip>

#include "G4AdjointCSManager.hh"

#include "G4PhysicalConstants.hh"
#include "G4SystemOfUnits.hh"
#include "G4AdjointCSMatrix.hh"
#include "G4AdjointInterpolator.hh"
#include "G4AdjointCSMatrix.hh"
#include "G4VEmAdjointModel.hh"
#include "G4ElementTable.hh"
#include "G4Element.hh"
#include "G4ParticleDefinition.hh"
#include "G4Element.hh"
#include "G4VEmProcess.hh"
#include "G4VEnergyLossProcess.hh"
#include "G4PhysicsTable.hh" 
#include "G4PhysicsLogVector.hh"
#include "G4PhysicsTableHelper.hh"
#include "G4Electron.hh"
#include "G4Gamma.hh"
#include "G4Proton.hh"
#include "G4AdjointElectron.hh"
#include "G4AdjointGamma.hh"
#include "G4AdjointProton.hh"
#include "G4ProductionCutsTable.hh"
#include "G4ProductionCutsTable.hh"

G4ThreadLocal G4AdjointCSManager* G4AdjointCSManager::theInstance = nullptr;
//
G4AdjointCSManager* G4AdjointCSManager::GetAdjointCSManager()
{ 
  if(theInstance == nullptr) {
    static G4ThreadLocalSingleton<G4AdjointCSManager> inst;
    theInstance = inst.Instance();
  }
  return theInstance; 
}

//
G4AdjointCSManager::G4AdjointCSManager()
{ CrossSectionMatrixesAreBuilt=false;
  TotalSigmaTableAreBuilt=false;
  theTotalForwardSigmaTableVector.clear();
  theTotalAdjointSigmaTableVector.clear();
  listOfForwardEmProcess.clear();
  listOfForwardEnergyLossProcess.clear();
  theListOfAdjointParticlesInAction.clear(); 
  EminForFwdSigmaTables.clear();
  EminForAdjSigmaTables.clear();
  EkinofFwdSigmaMax.clear();
  EkinofAdjSigmaMax.clear();
  listSigmaTableForAdjointModelScatProjToProj.clear();
  listSigmaTableForAdjointModelProdToProj.clear();
  Tmin=0.1*keV;
  Tmax=100.*TeV;
  nbins=320; //probably this should be decrease, that was choosen to avoid error in the CS value closed to CS jump.(For example at Tcut)
  
  RegisterAdjointParticle(G4AdjointElectron::AdjointElectron());
  RegisterAdjointParticle(G4AdjointGamma::AdjointGamma());
  RegisterAdjointParticle(G4AdjointProton::AdjointProton());
  
  verbose  = 1;
  currentParticleIndex = 0;
  currentMatIndex = 0;
  eindex = 0;
 
  lastPartDefForCS = nullptr;
  LastEkinForCS = lastPrimaryEnergy = lastTcut = 0.;
  LastCSCorrectionFactor = massRatio = 1.;
  
  forward_CS_is_used = true;
  forward_CS_mode = true;
  
  currentParticleDef = nullptr;
  currentCouple =nullptr;
  currentMaterial=nullptr;
  lastMaterial=nullptr;

  theAdjIon = nullptr;
  theFwdIon = nullptr;
 
  PreadjCS = PostadjCS = PrefwdCS = PostfwdCS = 0.0;
}
//
G4AdjointCSManager::~G4AdjointCSManager()
{;
}
//
size_t G4AdjointCSManager::RegisterEmAdjointModel(G4VEmAdjointModel* aModel)
{listOfAdjointEMModel.push_back(aModel);
 listSigmaTableForAdjointModelScatProjToProj.push_back(new G4PhysicsTable);
 listSigmaTableForAdjointModelProdToProj.push_back(new G4PhysicsTable);
 return listOfAdjointEMModel.size() -1;
 
}
//
void G4AdjointCSManager::RegisterEmProcess(G4VEmProcess* aProcess, G4ParticleDefinition* aFwdPartDef)
{ 
  G4ParticleDefinition* anAdjPartDef = GetAdjointParticleEquivalent(aFwdPartDef);
  if (anAdjPartDef && aProcess){
    RegisterAdjointParticle(anAdjPartDef);
  G4int index=-1;
  
    for (size_t i=0;i<theListOfAdjointParticlesInAction.size();i++){
      if (anAdjPartDef->GetParticleName() == theListOfAdjointParticlesInAction[i]->GetParticleName()) index=i;
    }
    listOfForwardEmProcess[index]->push_back(aProcess);
  }
}
//
void G4AdjointCSManager::RegisterEnergyLossProcess(G4VEnergyLossProcess* aProcess, G4ParticleDefinition* aFwdPartDef)
{
  G4ParticleDefinition* anAdjPartDef = GetAdjointParticleEquivalent(aFwdPartDef);
  if (anAdjPartDef && aProcess){
        RegisterAdjointParticle(anAdjPartDef);
    G4int index=-1;
    for (size_t i=0;i<theListOfAdjointParticlesInAction.size();i++){
      if (anAdjPartDef->GetParticleName() == theListOfAdjointParticlesInAction[i]->GetParticleName()) index=i;
    }
    listOfForwardEnergyLossProcess[index]->push_back(aProcess);
   }
}
//
void G4AdjointCSManager::RegisterAdjointParticle(G4ParticleDefinition* aPartDef)
{  G4int index=-1;
   for (size_t i=0;i<theListOfAdjointParticlesInAction.size();i++){
    if (aPartDef->GetParticleName() == theListOfAdjointParticlesInAction[i]->GetParticleName()) index=i;
   }
  
   if (index ==-1){
    listOfForwardEnergyLossProcess.push_back(new std::vector<G4VEnergyLossProcess*>());
  theTotalForwardSigmaTableVector.push_back(new G4PhysicsTable);
  theTotalAdjointSigmaTableVector.push_back(new G4PhysicsTable);
  listOfForwardEmProcess.push_back(new std::vector<G4VEmProcess*>());
  theListOfAdjointParticlesInAction.push_back(aPartDef);
  EminForFwdSigmaTables.push_back(std::vector<G4double> ());
  EminForAdjSigmaTables.push_back(std::vector<G4double> ());
  EkinofFwdSigmaMax.push_back(std::vector<G4double> ());
  EkinofAdjSigmaMax.push_back(std::vector<G4double> ());
  
   }
}
//
void G4AdjointCSManager::BuildCrossSectionMatrices()
{ 
  if (CrossSectionMatrixesAreBuilt) return;
    //Tcut, Tmax 
      //The matrices will be computed probably just once
        //When Tcut will change some PhysicsTable will be recomputed  
        // for each MaterialCutCouple but not all the matrices  
        //The Tcut defines a lower limit in the energy of the Projectile before the scattering
        //In the Projectile to Scattered Projectile case we have
        //      E_ScatProj<E_Proj-Tcut
        //Therefore in the adjoint case we have
        //      Eproj> E_ScatProj+Tcut
        //This implies that when computing the adjoint CS we should integrate over Epro
        // from E_ScatProj+Tcut to Emax
        //In the Projectile to Secondary case Tcut plays a role only in the fact that  
        // Esecond should be greater than Tcut to have the possibility to have any adjoint
        //process      
        //To avoid to recompute the matrices for all changes of MaterialCutCouple
        //We propose to compute the matrices only once for the minimum possible Tcut and then
        //to interpolate the probability for a new Tcut (implemented in G4VAdjointEmModel)
  
  
  theAdjointCSMatricesForScatProjToProj.clear();
  theAdjointCSMatricesForProdToProj.clear();
  const G4ElementTable* theElementTable = G4Element::GetElementTable();
  const G4MaterialTable* theMaterialTable = G4Material::GetMaterialTable();
  
  G4cout<<"========== Computation of cross section matrices for adjoint models =========="<<G4endl;
  for (size_t i=0; i<listOfAdjointEMModel.size();i++){
    G4VEmAdjointModel* aModel =listOfAdjointEMModel[i];
    G4cout<<"Build adjoint cross section matrices for "<<aModel->GetName()<<G4endl;
    if (aModel->GetUseMatrix()){
      std::vector<G4AdjointCSMatrix*>* aListOfMat1 = new std::vector<G4AdjointCSMatrix*>();
      std::vector<G4AdjointCSMatrix*>* aListOfMat2 = new std::vector<G4AdjointCSMatrix*>();
      aListOfMat1->clear();
      aListOfMat2->clear();
      if (aModel->GetUseMatrixPerElement()){
        if (aModel->GetUseOnlyOneMatrixForAllElements()){
            std::vector<G4AdjointCSMatrix*>
            two_matrices=BuildCrossSectionsMatricesForAGivenModelAndElement(aModel,1, 1, 80);
            aListOfMat1->push_back(two_matrices[0]);
            aListOfMat2->push_back(two_matrices[1]);
        }
        else {    
          for (size_t j=0; j<theElementTable->size();j++){
            G4Element* anElement=(*theElementTable)[j];
            G4int Z = G4lrint(anElement->GetZ());
            G4int A = G4lrint(anElement->GetN());
            std::vector<G4AdjointCSMatrix*>
              two_matrices=BuildCrossSectionsMatricesForAGivenModelAndElement(aModel,Z, A, 40);
            aListOfMat1->push_back(two_matrices[0]);
            aListOfMat2->push_back(two_matrices[1]);
          }
        } 
      }
      else { //Per material case
        for (size_t j=0; j<theMaterialTable->size();j++){
          G4Material* aMaterial=(*theMaterialTable)[j];
          std::vector<G4AdjointCSMatrix*>
            two_matrices=BuildCrossSectionsMatricesForAGivenModelAndMaterial(aModel,aMaterial, 40);
          aListOfMat1->push_back(two_matrices[0]);
          aListOfMat2->push_back(two_matrices[1]);
        }
      
      }
      theAdjointCSMatricesForProdToProj.push_back(*aListOfMat1);
      theAdjointCSMatricesForScatProjToProj.push_back(*aListOfMat2);  
      aModel->SetCSMatrices(aListOfMat1, aListOfMat2);  
    }
    else {  G4cout<<"The model "<<aModel->GetName()<<" does not use cross section matrices"<<G4endl;
      std::vector<G4AdjointCSMatrix*> two_empty_matrices;
      theAdjointCSMatricesForProdToProj.push_back(two_empty_matrices);
      theAdjointCSMatricesForScatProjToProj.push_back(two_empty_matrices);
      
    }   
  }
  G4cout<<"              All adjoint cross section matrices are computed!"<<G4endl;
  G4cout<<"======================================================================"<<G4endl;
  
  CrossSectionMatrixesAreBuilt = true;


}


//
void G4AdjointCSManager::BuildTotalSigmaTables()
{ if (TotalSigmaTableAreBuilt) return;

  
  const G4ProductionCutsTable* theCoupleTable= G4ProductionCutsTable::GetProductionCutsTable();
 
 
 //Prepare the Sigma table for all AdjointEMModel, will be filled later on 
  for (size_t i=0; i<listOfAdjointEMModel.size();i++){
    listSigmaTableForAdjointModelScatProjToProj[i]->clearAndDestroy();
  listSigmaTableForAdjointModelProdToProj[i]->clearAndDestroy();
  for (size_t j=0;j<theCoupleTable->GetTableSize();j++){
    listSigmaTableForAdjointModelScatProjToProj[i]->push_back(new G4PhysicsLogVector(Tmin, Tmax, nbins));
    listSigmaTableForAdjointModelProdToProj[i]->push_back(new G4PhysicsLogVector(Tmin, Tmax, nbins));
  }
  }
  


  for (size_t i=0;i<theListOfAdjointParticlesInAction.size();i++){
    G4ParticleDefinition* thePartDef = theListOfAdjointParticlesInAction[i];
  DefineCurrentParticle(thePartDef);
    theTotalForwardSigmaTableVector[i]->clearAndDestroy();
  theTotalAdjointSigmaTableVector[i]->clearAndDestroy();
  EminForFwdSigmaTables[i].clear();
  EminForAdjSigmaTables[i].clear();
  EkinofFwdSigmaMax[i].clear();
  EkinofAdjSigmaMax[i].clear();
  //G4cout<<thePartDef->GetParticleName();
  
    for (size_t j=0;j<theCoupleTable->GetTableSize();j++){
    const G4MaterialCutsCouple* couple = theCoupleTable->GetMaterialCutsCouple(j);
    
    /*
    G4String file_name1=couple->GetMaterial()->GetName()+"_"+thePartDef->GetParticleName()+"_adj_totCS.txt";
    G4String file_name2=couple->GetMaterial()->GetName()+"_"+thePartDef->GetParticleName()+"_fwd_totCS.txt";
    
    std::fstream FileOutputAdjCS(file_name1, std::ios::out);
    std::fstream FileOutputFwdCS(file_name2, std::ios::out);
    
    
    
    FileOutputAdjCS<<std::setiosflags(std::ios::scientific);
    FileOutputAdjCS<<std::setprecision(6);
    FileOutputFwdCS<<std::setiosflags(std::ios::scientific);
    FileOutputFwdCS<<std::setprecision(6);  
    */
        

    //make first the total fwd CS table for FwdProcess
    G4PhysicsVector* aVector =  new G4PhysicsLogVector(Tmin, Tmax, nbins);
    G4bool Emin_found=false;
    G4double sigma_max =0.;
    G4double e_sigma_max =0.;
    for(size_t l=0; l<aVector->GetVectorLength(); l++) { 
      G4double totCS=0.;
      G4double e=aVector->GetLowEdgeEnergy(l);
      for (size_t k=0; k<listOfForwardEmProcess[i]->size(); k++){
        totCS+=(*listOfForwardEmProcess[i])[k]->GetLambda(e, couple);
      }
      for (size_t k=0; k<listOfForwardEnergyLossProcess[i]->size(); k++){
        if (thePartDef == theAdjIon) { // e is considered already as the scaled energy
                size_t mat_index = couple->GetIndex();
          G4VEmModel* currentModel = (*listOfForwardEnergyLossProcess[i])[k]->SelectModelForMaterial(e,mat_index);
            G4double chargeSqRatio =  currentModel->GetChargeSquareRatio(theFwdIon,couple->GetMaterial(),e/massRatio);
          (*listOfForwardEnergyLossProcess[i])[k]->SetDynamicMassCharge(massRatio,chargeSqRatio);
        }
        G4double e1=e/massRatio;
        totCS+=(*listOfForwardEnergyLossProcess[i])[k]->GetLambda(e1, couple);
      }
      aVector->PutValue(l,totCS);
      if (totCS>sigma_max){
        sigma_max=totCS;
        e_sigma_max = e;
        
      }
      //FileOutputFwdCS<<e<<'\t'<<totCS<<G4endl;
      
      if (totCS>0 && !Emin_found) {
        EminForFwdSigmaTables[i].push_back(e);
        Emin_found=true;
      }
      
    
    }
    //FileOutputFwdCS.close();
    
    EkinofFwdSigmaMax[i].push_back(e_sigma_max);
    
    
    if(!Emin_found) EminForFwdSigmaTables[i].push_back(Tmax);
    
    theTotalForwardSigmaTableVector[i]->push_back(aVector);
    
    
    Emin_found=false;
    sigma_max=0;
    e_sigma_max =0.;
    G4PhysicsVector* aVector1 =  new G4PhysicsLogVector(Tmin, Tmax, nbins);
    for(eindex=0; eindex<aVector->GetVectorLength(); eindex++) { 
      G4double e=aVector->GetLowEdgeEnergy(eindex);
      G4double totCS =ComputeTotalAdjointCS(couple,thePartDef,e*0.9999999/massRatio); //massRatio needed for ions
      aVector1->PutValue(eindex,totCS);
      if (totCS>sigma_max){
        sigma_max=totCS;
        e_sigma_max = e;
        
      }
      //FileOutputAdjCS<<e<<'\t'<<totCS<<G4endl;
      if (totCS>0 && !Emin_found) {
        EminForAdjSigmaTables[i].push_back(e);
        Emin_found=true;
      }
    
    }
    //FileOutputAdjCS.close();
    EkinofAdjSigmaMax[i].push_back(e_sigma_max);
    if(!Emin_found) EminForAdjSigmaTables[i].push_back(Tmax);
      
    theTotalAdjointSigmaTableVector[i]->push_back(aVector1);
    
  }
  }
  TotalSigmaTableAreBuilt =true;
   
}
//
G4double G4AdjointCSManager::GetTotalAdjointCS(G4ParticleDefinition* aPartDef, G4double Ekin,
               const G4MaterialCutsCouple* aCouple)
{ DefineCurrentMaterial(aCouple);
  DefineCurrentParticle(aPartDef);  
  G4bool b;
  return (((*theTotalAdjointSigmaTableVector[currentParticleIndex])[currentMatIndex])->GetValue(Ekin*massRatio, b));
  
  
  
}            
//             
G4double G4AdjointCSManager::GetTotalForwardCS(G4ParticleDefinition* aPartDef, G4double Ekin,
               const G4MaterialCutsCouple* aCouple)
{ DefineCurrentMaterial(aCouple);
  DefineCurrentParticle(aPartDef);
  G4bool b;
  return (((*theTotalForwardSigmaTableVector[currentParticleIndex])[currentMatIndex])->GetValue(Ekin*massRatio, b));
  
  
}
//
G4double G4AdjointCSManager::GetAdjointSigma(G4double Ekin_nuc, size_t index_model,G4bool is_scat_proj_to_proj,
               const G4MaterialCutsCouple* aCouple)
{ DefineCurrentMaterial(aCouple);
  G4bool b;
  if (is_scat_proj_to_proj) return (((*listSigmaTableForAdjointModelScatProjToProj[index_model])[currentMatIndex])->GetValue(Ekin_nuc, b));
  else return (((*listSigmaTableForAdjointModelProdToProj[index_model])[currentMatIndex])->GetValue(Ekin_nuc, b));
}                        
//             
void G4AdjointCSManager::GetEminForTotalCS(G4ParticleDefinition* aPartDef,
               const G4MaterialCutsCouple* aCouple, G4double& emin_adj, G4double& emin_fwd)
{ DefineCurrentMaterial(aCouple);
  DefineCurrentParticle(aPartDef);
  emin_adj = EminForAdjSigmaTables[currentParticleIndex][currentMatIndex]/massRatio;
  emin_fwd = EminForFwdSigmaTables[currentParticleIndex][currentMatIndex]/massRatio;
  
  
  
}
//             
void G4AdjointCSManager::GetMaxFwdTotalCS(G4ParticleDefinition* aPartDef,
               const G4MaterialCutsCouple* aCouple, G4double& e_sigma_max, G4double& sigma_max)
{ DefineCurrentMaterial(aCouple);
  DefineCurrentParticle(aPartDef);
  e_sigma_max = EkinofFwdSigmaMax[currentParticleIndex][currentMatIndex];
  G4bool b;
  sigma_max =((*theTotalForwardSigmaTableVector[currentParticleIndex])[currentMatIndex])->GetValue(e_sigma_max, b);
  e_sigma_max/=massRatio;
  
  
}
//             
void G4AdjointCSManager::GetMaxAdjTotalCS(G4ParticleDefinition* aPartDef,
               const G4MaterialCutsCouple* aCouple, G4double& e_sigma_max, G4double& sigma_max)
{ DefineCurrentMaterial(aCouple);
  DefineCurrentParticle(aPartDef);
  e_sigma_max = EkinofAdjSigmaMax[currentParticleIndex][currentMatIndex];
  G4bool b;
  sigma_max =((*theTotalAdjointSigmaTableVector[currentParticleIndex])[currentMatIndex])->GetValue(e_sigma_max, b);
  e_sigma_max/=massRatio;
  
  
}            
//             
G4double G4AdjointCSManager::GetCrossSectionCorrection(G4ParticleDefinition* aPartDef,G4double PreStepEkin,const G4MaterialCutsCouple* aCouple, G4bool& fwd_is_used,
                    G4double& fwd_TotCS)
{ G4double corr_fac = 1.;
  if (forward_CS_mode && aPartDef ) {
    fwd_TotCS=PrefwdCS;
    if (LastEkinForCS != PreStepEkin || aPartDef != lastPartDefForCS || aCouple!=currentCouple) {
    DefineCurrentMaterial(aCouple);
    PreadjCS = GetTotalAdjointCS(aPartDef, PreStepEkin,aCouple);
    PrefwdCS = GetTotalForwardCS(aPartDef, PreStepEkin,aCouple);
    LastEkinForCS = PreStepEkin;
    lastPartDefForCS = aPartDef;
    if (PrefwdCS >0. &&  PreadjCS >0.) {
      forward_CS_is_used = true;
      LastCSCorrectionFactor = PrefwdCS/PreadjCS;
    }
    else {
      forward_CS_is_used = false;
      LastCSCorrectionFactor = 1.;
      
    }
    
  }
  corr_fac =LastCSCorrectionFactor;
  
  
  
  }  
  else {
    forward_CS_is_used = false;
    LastCSCorrectionFactor = 1.;
  }
  fwd_TotCS=PrefwdCS; 
  fwd_is_used = forward_CS_is_used;
  return  corr_fac;
}            
//                       
G4double G4AdjointCSManager::GetContinuousWeightCorrection(G4ParticleDefinition* aPartDef, G4double PreStepEkin,G4double AfterStepEkin,
               const G4MaterialCutsCouple* aCouple, G4double step_length)
{  G4double corr_fac = 1.;
  //return corr_fac;
  //G4double after_adjCS = GetTotalAdjointCS(aPartDef, AfterStepEkin,aCouple);
  G4double after_fwdCS = GetTotalForwardCS(aPartDef, AfterStepEkin,aCouple);
  G4double pre_adjCS = GetTotalAdjointCS(aPartDef, PreStepEkin,aCouple);
  if (!forward_CS_is_used || pre_adjCS ==0. ||  after_fwdCS==0.) {
  forward_CS_is_used=false;
  G4double pre_fwdCS = GetTotalForwardCS(aPartDef, PreStepEkin,aCouple);
  corr_fac *=std::exp((pre_adjCS-pre_fwdCS)*step_length);
  LastCSCorrectionFactor = 1.;
  }
  else {
  LastCSCorrectionFactor = after_fwdCS/pre_adjCS;
  } 
  

 
  return corr_fac; 
}            
//                       
G4double G4AdjointCSManager::GetPostStepWeightCorrection( )
{//return 1.; 
 return  1./LastCSCorrectionFactor;
  
}               
//
G4double  G4AdjointCSManager::ComputeAdjointCS(G4Material* aMaterial,
                   G4VEmAdjointModel* aModel, 
                   G4double PrimEnergy,
                   G4double Tcut,
                   G4bool IsScatProjToProjCase,
               std::vector<G4double>& CS_Vs_Element)
{ 
  
  G4double EminSec=0;
  G4double EmaxSec=0;
  
  if (IsScatProjToProjCase){
  EminSec= aModel->GetSecondAdjEnergyMinForScatProjToProjCase(PrimEnergy,Tcut);
  EmaxSec= aModel->GetSecondAdjEnergyMaxForScatProjToProjCase(PrimEnergy);
  }
  else if (PrimEnergy > Tcut || !aModel->GetApplyCutInRange()) {
  EminSec= aModel->GetSecondAdjEnergyMinForProdToProjCase(PrimEnergy);
  EmaxSec= aModel->GetSecondAdjEnergyMaxForProdToProjCase(PrimEnergy);
  }
  if (EminSec >= EmaxSec) return 0.;


  G4bool need_to_compute=false;
  if ( aMaterial!= lastMaterial || PrimEnergy != lastPrimaryEnergy || Tcut != lastTcut){
    lastMaterial =aMaterial;
    lastPrimaryEnergy = PrimEnergy;
    lastTcut=Tcut;
  listOfIndexOfAdjointEMModelInAction.clear();
  listOfIsScatProjToProjCase.clear();
  lastAdjointCSVsModelsAndElements.clear();
  need_to_compute=true;
  
  }
  size_t ind=0;
  if (!need_to_compute){
    need_to_compute=true;
    for (size_t i=0;i<listOfIndexOfAdjointEMModelInAction.size();i++){
    size_t ind1=listOfIndexOfAdjointEMModelInAction[i];
    if (aModel == listOfAdjointEMModel[ind1] && IsScatProjToProjCase == listOfIsScatProjToProjCase[i]){
      need_to_compute=false;
      CS_Vs_Element = lastAdjointCSVsModelsAndElements[ind];
    }
    ind++;
  }
  }
  
  if (need_to_compute){
    size_t ind_model=0;
  for (size_t i=0;i<listOfAdjointEMModel.size();i++){
    if (aModel == listOfAdjointEMModel[i]){
      ind_model=i;
      break;
    }
  }
  G4double Tlow=Tcut;
  if (!listOfAdjointEMModel[ind_model]->GetApplyCutInRange()) Tlow =listOfAdjointEMModel[ind_model]->GetLowEnergyLimit();
  listOfIndexOfAdjointEMModelInAction.push_back(ind_model); 
  listOfIsScatProjToProjCase.push_back(IsScatProjToProjCase);
  CS_Vs_Element.clear();
  if (!aModel->GetUseMatrix()){
    CS_Vs_Element.push_back(aModel->AdjointCrossSection(currentCouple,PrimEnergy,IsScatProjToProjCase));
                 
  
  }
  else if (aModel->GetUseMatrixPerElement()){
      size_t n_el = aMaterial->GetNumberOfElements();
    if (aModel->GetUseOnlyOneMatrixForAllElements()){
      G4AdjointCSMatrix* theCSMatrix;
      if (IsScatProjToProjCase){
        theCSMatrix=theAdjointCSMatricesForScatProjToProj[ind_model][0];
      }
      else    theCSMatrix=theAdjointCSMatricesForProdToProj[ind_model][0];
      G4double CS =0.;
      if (PrimEnergy > Tlow)
          CS = ComputeAdjointCS(PrimEnergy,theCSMatrix,Tlow);
      G4double factor=0.;
      for (size_t i=0;i<n_el;i++){ //this could be computed only once
        //size_t ind_el = aMaterial->GetElement(i)->GetIndex();
        factor+=aMaterial->GetElement(i)->GetZ()*aMaterial->GetVecNbOfAtomsPerVolume()[i];
      }
      CS *=factor;
      CS_Vs_Element.push_back(CS);
                
    }
    else {
      for (size_t i=0;i<n_el;i++){
        size_t ind_el = aMaterial->GetElement(i)->GetIndex();
        //G4cout<<aMaterial->GetName()<<G4endl;
        G4AdjointCSMatrix* theCSMatrix;
        if (IsScatProjToProjCase){
          theCSMatrix=theAdjointCSMatricesForScatProjToProj[ind_model][ind_el];
        }
        else    theCSMatrix=theAdjointCSMatricesForProdToProj[ind_model][ind_el];
        G4double CS =0.;
        if (PrimEnergy > Tlow)
          CS = ComputeAdjointCS(PrimEnergy,theCSMatrix,Tlow);
        //G4cout<<CS<<G4endl;     
        CS_Vs_Element.push_back(CS*(aMaterial->GetVecNbOfAtomsPerVolume()[i])); 
      }
    }   
    
  }
  else {
    size_t ind_mat = aMaterial->GetIndex();
    G4AdjointCSMatrix* theCSMatrix;
    if (IsScatProjToProjCase){
      theCSMatrix=theAdjointCSMatricesForScatProjToProj[ind_model][ind_mat];
    }
    else    theCSMatrix=theAdjointCSMatricesForProdToProj[ind_model][ind_mat];
    G4double CS =0.;
    if (PrimEnergy > Tlow)
      CS = ComputeAdjointCS(PrimEnergy,theCSMatrix,Tlow);
    CS_Vs_Element.push_back(CS);              
      
    
  }
  lastAdjointCSVsModelsAndElements.push_back(CS_Vs_Element);
  
  }
  
  
  G4double CS=0;
  for (size_t i=0;i<CS_Vs_Element.size();i++){
    CS+=CS_Vs_Element[i]; //We could put the progressive sum of the CS instead of the CS of an element itself
    
  }
  return CS;
}             
//  
G4Element* G4AdjointCSManager::SampleElementFromCSMatrices(G4Material* aMaterial,
                         G4VEmAdjointModel* aModel,
                         G4double PrimEnergy,
                         G4double Tcut,
                         G4bool IsScatProjToProjCase)
{ std::vector<G4double> CS_Vs_Element;
  G4double CS = ComputeAdjointCS(aMaterial,aModel,PrimEnergy,Tcut,IsScatProjToProjCase,CS_Vs_Element);
  G4double rand_var= G4UniformRand();
  G4double SumCS=0.;
  size_t ind=0;
  for (size_t i=0;i<CS_Vs_Element.size();i++){
  SumCS+=CS_Vs_Element[i];
  if (rand_var<=SumCS/CS){
    ind=i;
    break;
  }
  }
 
  return const_cast<G4Element*>(aMaterial->GetElement(ind));
 
 
              
}               
//
G4double G4AdjointCSManager::ComputeTotalAdjointCS(const G4MaterialCutsCouple* aCouple,
                   G4ParticleDefinition* aPartDef,
                   G4double Ekin)
{
 G4double TotalCS=0.;

 DefineCurrentMaterial(aCouple);

  
 std::vector<G4double> CS_Vs_Element;
 G4double CS;
 for (size_t i=0; i<listOfAdjointEMModel.size();i++){
  
  G4double Tlow=0;
  if (!listOfAdjointEMModel[i]->GetApplyCutInRange()) Tlow =listOfAdjointEMModel[i]->GetLowEnergyLimit();
  else {
    G4ParticleDefinition* theDirSecondPartDef = 
      GetForwardParticleEquivalent(listOfAdjointEMModel[i]->GetAdjointEquivalentOfDirectSecondaryParticleDefinition());
    size_t idx=56;
    if (theDirSecondPartDef->GetParticleName() == "gamma") idx = 0;
    else if (theDirSecondPartDef->GetParticleName() == "e-") idx = 1;
    else if (theDirSecondPartDef->GetParticleName() == "e+") idx = 2;
    if (idx <56) {
      const std::vector<G4double>* aVec = G4ProductionCutsTable::GetProductionCutsTable()->GetEnergyCutsVector(idx);
      Tlow =(*aVec)[aCouple->GetIndex()];
    } 
    
  
  }
  if ( Ekin<=listOfAdjointEMModel[i]->GetHighEnergyLimit() && Ekin>=listOfAdjointEMModel[i]->GetLowEnergyLimit()){
    if (aPartDef == listOfAdjointEMModel[i]->GetAdjointEquivalentOfDirectPrimaryParticleDefinition()){
      CS=ComputeAdjointCS(currentMaterial,
                       listOfAdjointEMModel[i], 
                       Ekin, Tlow,true,CS_Vs_Element);
      TotalCS += CS;
      (*listSigmaTableForAdjointModelScatProjToProj[i])[currentMatIndex]->PutValue(eindex,CS);             
    }
    if (aPartDef == listOfAdjointEMModel[i]->GetAdjointEquivalentOfDirectSecondaryParticleDefinition()){
      CS = ComputeAdjointCS(currentMaterial,
                       listOfAdjointEMModel[i], 
                       Ekin, Tlow,false, CS_Vs_Element);
      TotalCS += CS;
      (*listSigmaTableForAdjointModelProdToProj[i])[currentMatIndex]->PutValue(eindex,CS);
    }
    
  }
  else {
    (*listSigmaTableForAdjointModelScatProjToProj[i])[currentMatIndex]->PutValue(eindex,0.);
    (*listSigmaTableForAdjointModelProdToProj[i])[currentMatIndex]->PutValue(eindex,0.);
    
  }
 }
 return TotalCS;
    
 
} 
//
std::vector<G4AdjointCSMatrix*>
G4AdjointCSManager::BuildCrossSectionsMatricesForAGivenModelAndElement(G4VEmAdjointModel* aModel,G4int Z,G4int A,
                        G4int nbin_pro_decade)
{ 
  G4AdjointCSMatrix* theCSMatForProdToProjBackwardScattering = new G4AdjointCSMatrix(false);
  G4AdjointCSMatrix* theCSMatForScatProjToProjBackwardScattering = new G4AdjointCSMatrix(true);
 
 
  //make the vector of primary energy of the adjoint particle, could try to make this just once ? 
  
   G4double EkinMin =aModel->GetLowEnergyLimit();
   G4double EkinMaxForScat =aModel->GetHighEnergyLimit()*0.999;
   G4double EkinMaxForProd =aModel->GetHighEnergyLimit()*0.999;
   if (aModel->GetSecondPartOfSameType() )EkinMaxForProd =EkinMaxForProd/2.;
   
    
   //Product to projectile backward scattering
   //-----------------------------------------
   G4double fE=std::pow(10.,1./nbin_pro_decade);
   G4double E2=std::pow(10.,double( int(std::log10(EkinMin)*nbin_pro_decade)+1)/nbin_pro_decade)/fE;
   G4double E1=EkinMin;
   // Loop checking, 07-Aug-2015, Vladimir Ivanchenko
   while (E1 <EkinMaxForProd){
    E1=std::max(EkinMin,E2);
  E1=std::min(EkinMaxForProd,E1);
  std::vector< std::vector< double>* >  aMat= aModel->ComputeAdjointCrossSectionVectorPerAtomForSecond(E1,Z,A,nbin_pro_decade);
  if (aMat.size()>=2) {
    std::vector< double>* log_ESecVec=aMat[0];
    std::vector< double>* log_CSVec=aMat[1];
    G4double log_adjointCS=log_CSVec->back();
    //normalise CSVec such that it becomes a probability vector
    for (size_t j=0;j<log_CSVec->size();j++) {
            if (j==0) (*log_CSVec)[j] = 0.; 
      else (*log_CSVec)[j]=std::log(1.-std::exp((*log_CSVec)[j]-log_adjointCS) +1e-50);
    } 
    (*log_CSVec)[log_CSVec->size()-1]=(*log_CSVec)[log_CSVec->size()-2]-std::log(1000.);
    theCSMatForProdToProjBackwardScattering->AddData(std::log(E1),log_adjointCS,log_ESecVec,log_CSVec,0);
  } 
    E1=E2;
    E2*=fE;
   }
   
   //Scattered projectile to projectile backward scattering
   //-----------------------------------------
   
   E2=std::pow(10.,double( int(std::log10(EkinMin)*nbin_pro_decade)+1)/nbin_pro_decade)/fE;
   E1=EkinMin;
   // Loop checking, 07-Aug-2015, Vladimir Ivanchenko
   while (E1 <EkinMaxForScat){
    E1=std::max(EkinMin,E2);
  E1=std::min(EkinMaxForScat,E1);
  std::vector< std::vector< double>* >  aMat= aModel->ComputeAdjointCrossSectionVectorPerAtomForScatProj(E1,Z,A,nbin_pro_decade);
  if (aMat.size()>=2) {
    std::vector< double>* log_ESecVec=aMat[0];
    std::vector< double>* log_CSVec=aMat[1];
    G4double log_adjointCS=log_CSVec->back();
    //normalise CSVec such that it becomes a probability vector
    for (size_t j=0;j<log_CSVec->size();j++) {
            if (j==0) (*log_CSVec)[j] = 0.; 
      else (*log_CSVec)[j]=std::log(1.-std::exp((*log_CSVec)[j]-log_adjointCS)+1e-50);
    } 
    (*log_CSVec)[log_CSVec->size()-1]=(*log_CSVec)[log_CSVec->size()-2]-std::log(1000.);
    theCSMatForScatProjToProjBackwardScattering->AddData(std::log(E1),log_adjointCS,log_ESecVec,log_CSVec,0);
    }
  E1=E2;
    E2*=fE;
   }
   
   
  std::vector<G4AdjointCSMatrix*> res;
  res.clear();
  res.push_back(theCSMatForProdToProjBackwardScattering);
  res.push_back(theCSMatForScatProjToProjBackwardScattering);
  

/*
  G4String file_name;
  std::stringstream astream;
  G4String str_Z;
  astream<<Z;
  astream>>str_Z;  
  theCSMatForProdToProjBackwardScattering->Write(aModel->GetName()+G4String("_CSMat_Z")+str_Z+"_ProdToProj.txt"); 
  theCSMatForScatProjToProjBackwardScattering->Write(aModel->GetName()+G4String("_CSMat_Z")+str_Z+"_ScatProjToProj.txt");
 
*/

  
  return res;
  
  
}
//
std::vector<G4AdjointCSMatrix*>
G4AdjointCSManager::BuildCrossSectionsMatricesForAGivenModelAndMaterial(G4VEmAdjointModel* aModel,
                        G4Material* aMaterial,
                        G4int nbin_pro_decade)
{ 
  G4AdjointCSMatrix* theCSMatForProdToProjBackwardScattering = new G4AdjointCSMatrix(false);
  G4AdjointCSMatrix* theCSMatForScatProjToProjBackwardScattering = new G4AdjointCSMatrix(true);
 
 
  //make the vector of primary energy of the adjoint particle, could try to make this just once ? 
  
   G4double EkinMin =aModel->GetLowEnergyLimit();
   G4double EkinMaxForScat =aModel->GetHighEnergyLimit()*0.999;
   G4double EkinMaxForProd =aModel->GetHighEnergyLimit()*0.999;
   if (aModel->GetSecondPartOfSameType() )EkinMaxForProd =EkinMaxForProd/2.;
   
    
   
   
   
   
   
   //Product to projectile backward scattering
   //-----------------------------------------
   G4double fE=std::pow(10.,1./nbin_pro_decade);
   G4double E2=std::pow(10.,double( int(std::log10(EkinMin)*nbin_pro_decade)+1)/nbin_pro_decade)/fE;
   G4double E1=EkinMin;
   // Loop checking, 07-Aug-2015, Vladimir Ivanchenko
   while (E1 <EkinMaxForProd){
    E1=std::max(EkinMin,E2);
  E1=std::min(EkinMaxForProd,E1);
  std::vector< std::vector< double>* >  aMat= aModel->ComputeAdjointCrossSectionVectorPerVolumeForSecond(aMaterial,E1,nbin_pro_decade);
  if (aMat.size()>=2) {
    std::vector< double>* log_ESecVec=aMat[0];
    std::vector< double>* log_CSVec=aMat[1];
    G4double log_adjointCS=log_CSVec->back();
  
    //normalise CSVec such that it becomes a probability vector
    for (size_t j=0;j<log_CSVec->size();j++) {
            //G4cout<<"CSMan1 "<<(*log_CSVec)[j]<<G4endl;
      if (j==0) (*log_CSVec)[j] = 0.; 
      else (*log_CSVec)[j]=std::log(1.-std::exp((*log_CSVec)[j]-log_adjointCS));
      //G4cout<<"CSMan2 "<<(*log_CSVec)[j]<<G4endl;
    } 
    (*log_CSVec)[log_CSVec->size()-1]=(*log_CSVec)[log_CSVec->size()-2]-std::log(1000.);
    theCSMatForProdToProjBackwardScattering->AddData(std::log(E1),log_adjointCS,log_ESecVec,log_CSVec,0);
  } 
  
  
  
    E1=E2;
    E2*=fE;
   }
   
   //Scattered projectile to projectile backward scattering
   //-----------------------------------------
   
   E2=std::pow(10.,double( int(std::log10(EkinMin)*nbin_pro_decade)+1)/nbin_pro_decade)/fE;
   E1=EkinMin;
   // Loop checking, 07-Aug-2015, Vladimir Ivanchenko
   while (E1 <EkinMaxForScat){
    E1=std::max(EkinMin,E2);
  E1=std::min(EkinMaxForScat,E1);
  std::vector< std::vector< double>* >  aMat= aModel->ComputeAdjointCrossSectionVectorPerVolumeForScatProj(aMaterial,E1,nbin_pro_decade);
  if (aMat.size()>=2) {
    std::vector< double>* log_ESecVec=aMat[0];
    std::vector< double>* log_CSVec=aMat[1];
    G4double log_adjointCS=log_CSVec->back();
  
    for (size_t j=0;j<log_CSVec->size();j++) {
            //G4cout<<"CSMan1 "<<(*log_CSVec)[j]<<G4endl;
      if (j==0) (*log_CSVec)[j] = 0.; 
      else (*log_CSVec)[j]=std::log(1.-std::exp((*log_CSVec)[j]-log_adjointCS));
    //G4cout<<"CSMan2 "<<(*log_CSVec)[j]<<G4endl;if (theAdjPartDef->GetParticleName() == "adj_gamma") return G4Gamma::Gamma();
 
    } 
    (*log_CSVec)[log_CSVec->size()-1]=(*log_CSVec)[log_CSVec->size()-2]-std::log(1000.);
  
    theCSMatForScatProjToProjBackwardScattering->AddData(std::log(E1),log_adjointCS,log_ESecVec,log_CSVec,0);
    }
  E1=E2;
    E2*=fE; 
   }
   
   
   
   
   
   
   
  std::vector<G4AdjointCSMatrix*> res;
  res.clear();
  
  res.push_back(theCSMatForProdToProjBackwardScattering);
  res.push_back(theCSMatForScatProjToProjBackwardScattering); 
  
 /*
  theCSMatForProdToProjBackwardScattering->Write(aModel->GetName()+"_CSMat_"+aMaterial->GetName()+"_ProdToProj.txt");
  theCSMatForScatProjToProjBackwardScattering->Write(aModel->GetName()+"_CSMat_"+aMaterial->GetName()+"_ScatProjToProj.txt");
*/


  return res;
  
  
}

//
G4ParticleDefinition* G4AdjointCSManager::GetAdjointParticleEquivalent(G4ParticleDefinition* theFwdPartDef)
{
 if (theFwdPartDef->GetParticleName() == "e-") return G4AdjointElectron::AdjointElectron();
 else if (theFwdPartDef->GetParticleName() == "gamma") return G4AdjointGamma::AdjointGamma();
 else if (theFwdPartDef->GetParticleName() == "proton") return G4AdjointProton::AdjointProton();
 else if (theFwdPartDef ==theFwdIon) return theAdjIon;
 
 return 0;  
}
//
G4ParticleDefinition* G4AdjointCSManager::GetForwardParticleEquivalent(G4ParticleDefinition* theAdjPartDef)
{
 if (theAdjPartDef->GetParticleName() == "adj_e-") return G4Electron::Electron();
 else if (theAdjPartDef->GetParticleName() == "adj_gamma") return G4Gamma::Gamma();
 else if (theAdjPartDef->GetParticleName() == "adj_proton") return G4Proton::Proton();
 else if (theAdjPartDef == theAdjIon) return theFwdIon;
 return 0;  
}
//
void G4AdjointCSManager::DefineCurrentMaterial(const G4MaterialCutsCouple* couple)
{
  if(couple != currentCouple) {
    currentCouple   = const_cast<G4MaterialCutsCouple*> (couple);
    currentMaterial = const_cast<G4Material*> (couple->GetMaterial());
    currentMatIndex = couple->GetIndex();
    lastPartDefForCS =0;
    LastEkinForCS =0;
    LastCSCorrectionFactor =1.;
  }  
}

//
void G4AdjointCSManager::DefineCurrentParticle(const G4ParticleDefinition* aPartDef)
{
  if(aPartDef != currentParticleDef) {
  
    currentParticleDef= const_cast< G4ParticleDefinition* > (aPartDef);
  massRatio=1;
  if (aPartDef == theAdjIon) massRatio = proton_mass_c2/aPartDef->GetPDGMass();
    currentParticleIndex=1000000;
  for (size_t i=0;i<theListOfAdjointParticlesInAction.size();i++){
      if (aPartDef == theListOfAdjointParticlesInAction[i]) currentParticleIndex=i;
    } 
   
  }  
}



//
G4double G4AdjointCSManager::ComputeAdjointCS(G4double aPrimEnergy,G4AdjointCSMatrix*
        anAdjointCSMatrix,G4double Tcut)
{ 
  std::vector< double> *theLogPrimEnergyVector = anAdjointCSMatrix->GetLogPrimEnergyVector();
  if (theLogPrimEnergyVector->size() ==0){
  G4cout<<"No data are contained in the given AdjointCSMatrix!"<<G4endl;
  G4cout<<"The s"<<G4endl;
  return 0.;
  
  }
  G4double log_Tcut = std::log(Tcut);
  G4double log_E =std::log(aPrimEnergy);
  
  if (aPrimEnergy <= Tcut || log_E > theLogPrimEnergyVector->back()) return 0.;
  
  

  G4AdjointInterpolator* theInterpolator=G4AdjointInterpolator::GetInstance();
 
  size_t ind =theInterpolator->FindPositionForLogVector(log_E,*theLogPrimEnergyVector);
  G4double aLogPrimEnergy1,aLogPrimEnergy2;
  G4double aLogCS1,aLogCS2;
  G4double log01,log02;
  std::vector< double>* aLogSecondEnergyVector1 =0;
  std::vector< double>* aLogSecondEnergyVector2  =0;
  std::vector< double>* aLogProbVector1=0;
  std::vector< double>* aLogProbVector2=0;
  std::vector< size_t>* aLogProbVectorIndex1=0;
  std::vector< size_t>* aLogProbVectorIndex2=0;
  
                     
  anAdjointCSMatrix->GetData(ind, aLogPrimEnergy1,aLogCS1,log01, aLogSecondEnergyVector1,aLogProbVector1,aLogProbVectorIndex1);
  anAdjointCSMatrix->GetData(ind+1, aLogPrimEnergy2,aLogCS2,log02, aLogSecondEnergyVector2,aLogProbVector2,aLogProbVectorIndex2);
  if (anAdjointCSMatrix->IsScatProjToProjCase()){ //case where the Tcut plays a role
  G4double log_minimum_prob1, log_minimum_prob2;
  log_minimum_prob1=theInterpolator->InterpolateForLogVector(log_Tcut,*aLogSecondEnergyVector1,*aLogProbVector1);
  log_minimum_prob2=theInterpolator->InterpolateForLogVector(log_Tcut,*aLogSecondEnergyVector2,*aLogProbVector2);
  aLogCS1+= log_minimum_prob1;
  aLogCS2+= log_minimum_prob2;
  }
 
  G4double log_adjointCS = theInterpolator->LinearInterpolation(log_E,aLogPrimEnergy1,aLogPrimEnergy2,aLogCS1,aLogCS2);
  return std::exp(log_adjointCS); 
  
  
}