sPHENIXTrackerTpc.h

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#ifndef SPHENIX_SPHENIXTRACKERTPC_H
#define SPHENIX_SPHENIXTRACKERTPC_H

#include "HelixHough.h"
#include "HelixKalmanState.h"
#include "HelixRange.h"
#include "Seamstress.h"
#include "SimpleHit3D.h"

#include <algorithm>
#include <cmath>
#include <map>
#include <memory>
#include <set>
#include <vector>

class CylinderKalman;
class HelixResolution;
class SimpleTrack3D;

namespace SeamStress { template <class TClass> class Pincushion; }

class AngleIndexPair {
 public:
  AngleIndexPair(float ang, unsigned int idx) : angle(ang), index(idx) {
    float twopi = 2. * M_PI;
    int a = (int)(angle / twopi);
    angle -= a * twopi;
    while (angle < 0.) {
      angle += twopi;
    }
    while (angle >= twopi) {
      angle -= twopi;
    }
  }
  ~AngleIndexPair() {}

  bool operator<(const AngleIndexPair& other) const {
    return angle < other.angle;
  }

  static float absDiff(float angle1, float angle2) {
    float diff = (angle1 - angle2);
    while (diff > M_PI) {
      diff -= 2. * M_PI;
    }
    while (diff < -M_PI) {
      diff += 2. * M_PI;
    }
    diff = fabs(diff);
    return diff;
  }

  float angle;
  unsigned int index;
};

class AngleIndexList {
 public:
  AngleIndexList() : sorted(false) {}
  ~AngleIndexList() {}

  void addPair(AngleIndexPair& angind) {
    sorted = false;
    vec.push_back(angind);
  }

  void getRangeListSimple(float angle, float error,
                          std::vector<AngleIndexPair*>& result) {
    result.clear();

    for (unsigned int i = 0; i < vec.size(); i++) {
      if (AngleIndexPair::absDiff(angle, vec[i].angle) <= error) {
        result.push_back(&(vec[i]));
      }
    }
  }

  void getRangeList(float angle, float error,
                    std::vector<AngleIndexPair*>& result) {
    float twopi = 2. * M_PI;
    int a = (int)(angle / twopi);
    angle -= a * twopi;
    while (angle < 0.) {
      angle += twopi;
    }
    while (angle >= twopi) {
      angle -= twopi;
    }

    if (vec.size() <= 4) {
      return getRangeListSimple(angle, error, result);
    }

    result.clear();

    unsigned int closest = findClosest(angle);
    // first, traverse upward
    unsigned int current = closest;
    unsigned int lowest = 0;
    unsigned int highest = vec.size() - 1;
    while (true) {
      if (AngleIndexPair::absDiff(angle, vec[current].angle) <= error) {
        result.push_back(&(vec[current]));
        current = (current + 1) % (vec.size());
        if (current == closest) {
          return;
        }
      } else {
        break;
      }
    }

    // now, traverse downward
    if (current <= closest) {
      lowest = current;
    } else {
      highest = current;
    }
    current = ((closest + vec.size()) - 1) % (vec.size());
    while (true) {
      if ((current == lowest) || (current == highest)) {
        break;
      }
      if (AngleIndexPair::absDiff(angle, vec[current].angle) <= error) {
        result.push_back(&(vec[current]));
        current = ((current + vec.size()) - 1) % (vec.size());
      } else {
        break;
      }
    }
  }

  unsigned int findClosestSimple(float angle, unsigned int lower,
                                 unsigned int upper) {
    unsigned int closest = lower;
    float diff = AngleIndexPair::absDiff(vec[closest].angle, angle);
    for (unsigned int i = (lower + 1); i <= upper; i++) {
      float tempdiff = AngleIndexPair::absDiff(vec[i].angle, angle);
      if (tempdiff < diff) {
        closest = i;
        diff = tempdiff;
      }
    }

    return closest;
  }

  unsigned int findClosest(float angle) {
    if (vec.size() <= 4) {
      return findClosestSimple(angle, 0, vec.size() - 1);
    }

    if (sorted == false) {
      std::sort(vec.begin(), vec.end());
      sorted = true;
    }

    unsigned int lower = 0;
    unsigned int upper = vec.size() - 1;
    unsigned int middle = vec.size() / 2;
    while (true) {
      if ((upper - lower) <= 4) {
        return findClosestSimple(angle, lower, upper);
      }

      if (angle <= vec[middle].angle) {
        upper = middle;
        middle = (lower + upper) / 2;
      } else {
        lower = middle;
        middle = (lower + upper) / 2;
      }
    }
  }

  std::vector<AngleIndexPair> vec;
  bool sorted;
};

class TrackSegment {
 public:
  TrackSegment()
      : chi2(0.), ux(0.), uy(0.), kappa(0.), dkappa(0.), seed(0), n_hits(0) {}
  ~TrackSegment() {}

  float chi2;
  float ux, uy;
  float kappa;
  float dkappa;
  std::vector<unsigned int> hits;
  unsigned int seed;
  unsigned int bin;
  unsigned int n_hits;
};

class sPHENIXTrackerTpc : public HelixHough {
 public:
  sPHENIXTrackerTpc(unsigned int n_phi, unsigned int n_d, unsigned int n_k,
                 unsigned int n_dzdl, unsigned int n_z0,
                 HelixResolution& min_resolution,
                 HelixResolution& max_resolution, HelixRange& range,
                 std::vector<float>& material, std::vector<float>& radius,
                 float Bfield);
  sPHENIXTrackerTpc(std::vector<std::vector<unsigned int> >& zoom_profile,
                 unsigned int minzoom, HelixRange& range,
                 std::vector<float>& material, std::vector<float>& radius,
                 float Bfield, bool parallel = false,
                 unsigned int num_threads = 1);
  virtual ~sPHENIXTrackerTpc();

  void finalize(std::vector<SimpleTrack3D>& input,
                std::vector<SimpleTrack3D>& output);
  
  void findTracks(std::vector<SimpleHit3D>& hits,
                  std::vector<SimpleTrack3D>& tracks,
      const HelixRange& range);
  void findTracksBySegments(std::vector<SimpleHit3D>& hits,
                            std::vector<SimpleTrack3D>& tracks,
                            const HelixRange& range);  
  void initEvent(std::vector<SimpleHit3D>& hits, unsigned int /*min_hits*/) {

    int min_layer = 999999;
    int max_layer = 0;
    for (unsigned int i = 0; i < hits.size(); ++i) {
      if (hits[i].get_layer() < min_layer) {
        min_layer = hits[i].get_layer();
      }
      if (hits[i].get_layer() > max_layer) {
        max_layer = hits[i].get_layer();
      }
    }
    setSeedLayer(min_layer);
    setNLayers(max_layer + 1);


    nfits = 0;
    combos.clear();
    fail_combos.clear();
    pass_combos.clear();
    seeding = false;
    //     required_layers = min_hits;
    required_layers = req_layers;
    findtracksiter = 0;
    CAtime = 0.;
    KALtime = 0.;
    findtracks_bin = 0;
  }

  void initSeeding(std::vector<SimpleTrack3D>& seeds) {
    seeding = true;
    seed_used.clear();
    seed_used.assign(seeds.size(), false);
    AngleIndexList templist;
    angle_list.clear();
    angle_list.assign(n_layers, templist);
  }

  void clear() {
    track_states.clear();
    isolation_variable.clear();
  }

  bool breakRecursion(const std::vector<SimpleHit3D>& hits,
                      const HelixRange& range);
  float phiError(SimpleHit3D& hit, float min_k, float max_k, float min_d,
                 float max_d, float min_z0, float max_z0, float min_dzdl,
                 float max_dzdl, bool pairvoting = false);
  float dzdlError(SimpleHit3D& hit, float min_k, float max_k, float min_d,
                  float max_d, float min_z0, float max_z0, float min_dzdl,
                  float max_dzdl, bool pairvoting = false);

  static float fitTrack(SimpleTrack3D& track,
      float scale = 1.0);
  static float fitTrack(SimpleTrack3D& track,
      std::vector<float>& chi2_hit,
      float scale = 1.0);

  void setVerbosity(int v) { verbosity = v; }

  void setCutOnDca(bool dcut) { cut_on_dca = dcut; }
  void setDcaCut(float dcut) { dca_cut = dcut; }
  void setVertex(float vx, float vy, float vz) {
    vertex_x = vx;
    vertex_y = vy;
    vertex_z = vz;
  }

  void setRejectGhosts(bool rg) { reject_ghosts = rg; }

  std::vector<float>& getIsolation() { return isolation_variable; }

  static void calculateKappaTangents(
      float* x1_a, float* y1_a, float* z1_a, float* x2_a, float* y2_a,
      float* z2_a, float* x3_a, float* y3_a, float* z3_a, float* dx1_a,
      float* dy1_a, float* dz1_a, float* dx2_a, float* dy2_a, float* dz2_a,
      float* dx3_a, float* dy3_a, float* dz3_a, float* kappa_a, float* dkappa_a,
      float* ux_mid_a, float* uy_mid_a, float* ux_end_a, float* uy_end_a,
      float* dzdl_1_a, float* dzdl_2_a, float* ddzdl_1_a, float* ddzdl_2_a);
  void calculateKappaTangents(
      float* x1_a, float* y1_a, float* z1_a, float* x2_a, float* y2_a,
      float* z2_a, float* x3_a, float* y3_a, float* z3_a, float* dx1_a,
      float* dy1_a, float* dz1_a, float* dx2_a, float* dy2_a, float* dz2_a,
      float* dx3_a, float* dy3_a, float* dz3_a, float* kappa_a, float* dkappa_a,
      float* ux_mid_a, float* uy_mid_a, float* ux_end_a, float* uy_end_a,
      float* dzdl_1_a, float* dzdl_2_a, float* ddzdl_1_a, float* ddzdl_2_a,
      float sinang_cut, float cosang_diff_inv, float* cur_kappa_a,
      float* cur_dkappa_a, float* cur_ux_a, float* cur_uy_a, float* cur_chi2_a,
      float* chi2_a);

  void pairRejection(std::vector<SimpleTrack3D>& input,
                     std::vector<SimpleTrack3D>& output,
                     std::vector<bool>& usetrack,
                     std::vector<float>& next_best_chi2);
  void tripletRejection(std::vector<SimpleTrack3D>& input,
                        std::vector<SimpleTrack3D>& output,
                        std::vector<bool>& usetrack,
                        std::vector<float>& next_best_chi2);

  bool seedWasUsed(unsigned int seed_index) { return seed_used.at(seed_index); }

  void setSeparateByHelicity(bool sbh) {
    separate_by_helicity = sbh;
    if (is_parallel == true) {
      for (unsigned int i = 0; i < thread_trackers.size(); ++i) {
        thread_trackers[i]->setSeparateByHelicity(sbh);
      }
    }
  }

  void requireLayers(unsigned int nl) {
    check_layers = true;
    req_layers = nl;
    if (is_parallel == true) {
      for (unsigned int i = 0; i < thread_trackers.size(); ++i) {
        thread_trackers[i]->requireLayers(nl);
      }
    }
  }

  virtual void setMaxHitsPairs(unsigned int mhp) {
    max_hits_pairs = mhp;
    if (is_parallel == true) {
      for (unsigned int i = 0; i < thread_trackers.size(); ++i) {
        thread_trackers[i]->setMaxHitsPairs(mhp);
      }
    }
  }

  void setBinScale(float b_scl) {
    bin_scale = b_scl;
    if (is_parallel == true) {
      for (unsigned int i = 0; i < thread_trackers.size(); ++i) {
        thread_trackers[i]->setBinScale(b_scl);
      }
    }
  }
  void setZBinScale(float b_scl) {
    z_bin_scale = b_scl;
    if (is_parallel == true) {
      for (unsigned int i = 0; i < thread_trackers.size(); ++i) {
        thread_trackers[i]->setZBinScale(b_scl);
      }
    }
  }
  void setRemoveHits(bool rh) {
    remove_hits = rh;
    if (is_parallel == true) {
      for (unsigned int i = 0; i < thread_trackers.size(); ++i) {
        thread_trackers[i]->setRemoveHits(rh);
      }
    }
  }


  void setStartLayer(int start) {
    layer_start = start;
  }
 
  void setEndLayer(int end) {
    layer_end = end;
  }

  void setSeedLayer(int sl) {
    seed_layer = sl;
    if (is_parallel == true) {
      for (unsigned int i = 0; i < thread_trackers.size(); ++i) {
        thread_trackers[i]->setSeedLayer(sl);
      }
    }
  }

  void setNLayers(unsigned int n) {
    n_layers = n;
    std::vector<SimpleHit3D> one_layer;
    layer_sorted.clear();
    layer_sorted.assign(n_layers, one_layer);
    temp_comb.assign(n_layers, 0);
    if (is_parallel == true) {
      for (unsigned int i = 0; i < thread_trackers.size(); ++i) {
        thread_trackers[i]->setNLayers(n);
      }
    }
  }

  void setFastChi2Cut(float par0, float par1, float max) {
    fast_chi2_cut_par0 = par0;
    fast_chi2_cut_par1 = par1;
    fast_chi2_cut_max = max;
    if (is_parallel == true) {
      for (unsigned int i = 0; i < thread_trackers.size(); ++i) {
        thread_trackers[i]->setFastChi2Cut(par0, par1, max);
      }
    }
  }
  void setChi2Cut(float c) {
    chi2_cut = c;
    if (is_parallel == true) {
      for (unsigned int i = 0; i < thread_trackers.size(); ++i) {
        thread_trackers[i]->setChi2Cut(c);
      }
    }
  }
  void setChi2RemovalCut(float c) {
    chi2_removal_cut = c;
    if (is_parallel == true) {
      for (unsigned int i = 0; i < thread_trackers.size(); ++i) {
        thread_trackers[i]->setChi2RemovalCut(c);
      }
    }
  }

  void setNRemovalHits(unsigned int n) {
    n_removal_hits = n;
    if (is_parallel == true) {
      for (unsigned int i = 0; i < thread_trackers.size(); ++i) {
        thread_trackers[i]->setNRemovalHits(n);
      }
    }
  }

  void setCosAngleCut(float cut) {
    cosang_cut = cut;
    if (is_parallel == true) {
      for (unsigned int i = 0; i < thread_trackers.size(); ++i) {
        thread_trackers[i]->setCosAngleCut(cut);
      }
    }
  }

  void setCellularAutomatonChi2Cut(float cut) {
    ca_chi2_cut = cut;
    if (is_parallel == true) {
      for (unsigned int i = 0; i < thread_trackers.size(); ++i) {
        thread_trackers[i]->setCellularAutomatonChi2Cut(cut);
      }
    }
  }

  void setThread() { is_thread = true; }

  void initSplitting(std::vector<SimpleHit3D>& hits, unsigned int min_hits,
                     unsigned int max_hits);

  void setHitErrorScale(unsigned int layer, float scale) {
    if (layer >= hit_error_scale.size()) {
      hit_error_scale.resize(layer + 1, 1.);
    }
    hit_error_scale[layer] = scale;
  }

  void setRequirePixels(bool rp){require_pixels = rp;}


 private:
  float kappaToPt(float kappa);
  float ptToKappa(float pt);
  void findTracksByCombinatorialKalman(std::vector<SimpleHit3D>& hits,
                                       std::vector<SimpleTrack3D>& tracks,
                                       const HelixRange& range);

  float fast_chi2_cut_par0;
  float fast_chi2_cut_par1;
  float fast_chi2_cut_max;
  float chi2_cut;
  float chi2_removal_cut;
  unsigned int n_removal_hits;
  std::set<std::vector<unsigned int> > combos;
  std::map<std::vector<unsigned int>, HelixKalmanState> pass_combos;
  std::set<std::vector<unsigned int> > fail_combos;
  std::vector<float> detector_scatter;
  std::vector<float> integrated_scatter;
  std::vector<float> detector_radii;
  bool seeding;
  int verbosity;
  bool cut_on_dca;
  float dca_cut;
  float vertex_x, vertex_y, vertex_z;
  unsigned int required_layers;
  bool reject_ghosts;
  unsigned int nfits;

  CylinderKalman* kalman;

  std::vector<float> isolation_variable;

  unsigned int findtracksiter;

  float prev_max_k;
  float prev_max_dzdl;
  float prev_p_inv;

  float detector_B_field;

  std::vector<TrackSegment> segments1;
  std::vector<TrackSegment> segments2;
  
  std::vector<std::vector<SimpleHit3D> > layer_sorted;
  std::vector<unsigned int> temp_comb;
  
  int seed_layer;
  
  std::vector<bool> seed_used;
  
  unsigned int nthreads;
  std::vector<SeamStress::Seamstress*> *vssp;
  std::vector<SeamStress::Seamstress> vss;
  SeamStress::Pincushion<sPHENIXTrackerTpc> *pins;
  std::vector<sPHENIXTrackerTpc*> thread_trackers;
  std::vector<std::vector<SimpleTrack3D> > thread_tracks;
  std::vector<HelixRange> thread_ranges;
  std::vector<std::vector<SimpleHit3D> > thread_hits;
  std::vector<std::vector<SimpleHit3D> > split_input_hits;
  std::vector<std::vector<std::vector<SimpleHit3D> >* > split_output_hits;
  std::vector<std::vector<HelixRange>* > split_ranges;
  bool is_parallel;
  unsigned int thread_min_hits;
  unsigned int thread_max_hits;
  bool is_thread;
  
  std::vector<AngleIndexList> angle_list;
  
  double CAtime;
  double KALtime;
  
  std::vector<std::vector<SimpleHit3D> > layer_sorted_1[4];
  unsigned int findtracks_bin;
  
  float ca_chi2_cut;
  float cosang_cut;
  
  std::vector<float> hit_error_scale;

  bool require_pixels;

};


#endif