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DetectorConstruction.hh
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1 //
2 // ********************************************************************
3 // * License and Disclaimer *
4 // * *
5 // * The Geant4 software is copyright of the Copyright Holders of *
6 // * the Geant4 Collaboration. It is provided under the terms and *
7 // * conditions of the Geant4 Software License, included in the file *
8 // * LICENSE and available at http://cern.ch/geant4/license . These *
9 // * include a list of copyright holders. *
10 // * *
11 // * Neither the authors of this software system, nor their employing *
12 // * institutes,nor the agencies providing financial support for this *
13 // * work make any representation or warranty, express or implied, *
14 // * regarding this software system or assume any liability for its *
15 // * use. Please see the license in the file LICENSE and URL above *
16 // * for the full disclaimer and the limitation of liability. *
17 // * *
18 // * This code implementation is the result of the scientific and *
19 // * technical work of the GEANT4 collaboration. *
20 // * By using, copying, modifying or distributing the software (or *
21 // * any work based on the software) you agree to acknowledge its *
22 // * use in resulting scientific publications, and indicate your *
23 // * acceptance of all terms of the Geant4 Software license. *
24 // ********************************************************************
25 //
26 // This example is provided by the Geant4-DNA collaboration
27 // Any report or published results obtained using the Geant4-DNA software
28 // shall cite the following Geant4-DNA collaboration publication:
29 // Med. Phys. 37 (2010) 4692-4708
30 // Delage et al. PDB4DNA: implementation of DNA geometry from the Protein Data
31 // Bank (PDB) description for Geant4-DNA Monte-Carlo
32 // simulations (submitted to Comput. Phys. Commun.)
33 // The Geant4-DNA web site is available at http://geant4-dna.org
34 //
35 // --------------------------------------------------------------
36 // Authors: E. Delage
37 // november 2013
38 // --------------------------------------------------------------
39 //
40 //
43 
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45 
46 #ifndef DetectorConstruction_h
47 #define DetectorConstruction_h 1
48 
49 #include "G4Material.hh"
50 #include "G4VUserDetectorConstruction.hh"
51 #include "globals.hh"
52 
53 class DetectorMessenger;
54 class G4LogicalVolume;
55 class G4VPhysicalVolume;
56 
57 #include "PDBlib.hh"
58 
60 
61 class DetectorConstruction : public G4VUserDetectorConstruction
62 {
63 public:
64  DetectorConstruction();
65  virtual ~DetectorConstruction();
66 
67  virtual G4VPhysicalVolume* Construct();
68 
69 private:
71  G4String fPdbFileName;
72 
74  unsigned short int fChosenOption;
75 
77  unsigned short int fPdbFileStatus;
78 
79  PDBlib fPDBlib;
80  Molecule *fpMoleculeList;
81  Barycenter *fpBarycenterList;
82  G4Material *fpDefaultMaterial;
83  G4Material *fpWaterMaterial;
84 
85  void ConstructMaterials();
86  void CheckMaterials();
87  G4VPhysicalVolume* ConstructWorld();
88  G4VPhysicalVolume* DefineVolumes(G4String filename,unsigned short int option);
89 
90  void AtomisticView(G4LogicalVolume*,Molecule *,double atomSizeFactor);
91  void BarycenterView(G4LogicalVolume* ,Barycenter *);
92  void ResiduesView(G4LogicalVolume* ,Barycenter *);
93  void DrawBoundingVolume(G4LogicalVolume* ,Molecule *);
94 
95  DetectorMessenger* fpMessenger; // messenger
96 
97  G4bool fCheckOverlaps; // option to activate checking of volumes overlaps
98 
99 public:
100  //accessed by steppingAction.cc :
101  Barycenter *GetBarycenterList();
102  PDBlib GetPDBlib();
103  Molecule *GetMoleculeList();
104 
105  //accessed by DetectorConstruction.cc :
106  void LoadPDBfile(G4String fileName);
107  void DrawAtoms_();
108  void DrawNucleotides_();
109  void DrawResidues_();
110  void BuildBoundingVolume();
111  void DrawAtomsWithBounding_();
112  void DrawNucleotidesWithBounding_();
113  void DrawResiduesWithBounding_();
114 };
115 
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117 
118 #endif
119