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Barycenter Class Reference

Molecule Class. More...

#include <geant4/tree/geant4-10.6-release/examples/extended/medical/dna/pdb4dna/include/PDBbarycenter.hh>

+ Collaboration diagram for Barycenter:

Public Member Functions

 Barycenter ()
 First constructor.
 
 Barycenter (int bNum, double x, double y, double z, double Bx, double By, double Bz, double Sx, double Sy, double Sz, double Px, double Py, double Pz)
 Second constructor.
 
 ~Barycenter ()
 Destructor.
 
Barycenter * GetNext ()
 Get the next Barycenter.
 
int GetID ()
 Get the first.
 
void SetNext (Barycenter *)
 Set the next Barycenter.
 
void SetDistance (int i, double)
 Set the distance between atom i and nucleotide barycenter.
 
double GetDistance (int i)
 Get the distance between atom i and nucleotide barycenter.
 
void SetRadius (double)
 Set the distance between the farther atom and nucleotide barycenter.
 
double GetRadius ()
 Get the distance between the farther atom and nucleotide barycenter.
 

Public Attributes

int fBaryNum
 Barycenter number.
 
double fDistanceTab [33]
 distance table [0..32] (11 hydrogens!)
 
double fRadius
 
double fCenterX
 "X coordinate" of this nucelotide Barycenter
 
double fCenterY
 "Y coordinate" of this nucelotide Barycenter
 
double fCenterZ
 "Z coordinate" of this nucelotide Barycenter
 
double fCenterBaseX
 "X coordinate" of this Base Barycenter
 
double fCenterBaseY
 "Y coordinate" of this Base Barycenter
 
double fCenterBaseZ
 "Z coordinate" of this Base Barycenter
 
double fCenterSugarX
 "X coordinate" of this Sugar Barycenter
 
double fCenterSugarY
 "Y coordinate" of this Sugar Barycenter
 
double fCenterSugarZ
 "Z coordinate" of this Sugar Barycenter
 
double fCenterPhosphateX
 "X coordinate" of this Phosphate Barycenter
 
double fCenterPhosphateY
 "Y coordinate" of this Phosphate Barycenter
 
double fCenterPhosphateZ
 "Z coordinate" of this Phosphate Barycenter
 

Private Attributes

Barycenter * fpNext
 Header of the next Molecule (usage before vector)
 

Detailed Description

Molecule Class.

This Class define Molecule model ...

Definition at line 53 of file PDBbarycenter.hh.

View newest version in sPHENIX GitHub at line 53 of file PDBbarycenter.hh

Constructor & Destructor Documentation

Barycenter::Barycenter ( )

First constructor.

Definition at line 43 of file PDBbarycenter.cc.

View newest version in sPHENIX GitHub at line 43 of file PDBbarycenter.cc

References fDistanceTab.

Barycenter::Barycenter ( int  bNum,
double  x,
double  y,
double  z,
double  Bx,
double  By,
double  Bz,
double  Sx,
double  Sy,
double  Sz,
double  Px,
double  Py,
double  Pz 
)

Second constructor.

<Barycenter number

< "X coordinate" of this Base Barycenter

< "Y coordinate" of this Base Barycenter

< "Z coordinate" of this Base Barycenter

< "X coordinate" of this Sugar Barycenter

< "Y coordinate" of this Sugar Barycenter

< "Z coordinate" of this Sugar Barycenter

< "X coordinate" of this Phosphate Barycenter

< "Y coordinate" of this Phosphate Barycenter

< "Z coordinate" of this Phosphate Barycenter

Definition at line 58 of file PDBbarycenter.cc.

View newest version in sPHENIX GitHub at line 58 of file PDBbarycenter.cc

References Acts::IntegrationTest::Bz, fBaryNum, fCenterBaseX, fCenterBaseY, fCenterBaseZ, fCenterPhosphateX, fCenterPhosphateY, fCenterPhosphateZ, fCenterSugarX, fCenterSugarY, fCenterSugarZ, fCenterX, fCenterY, fCenterZ, fDistanceTab, fpNext, fRadius, x, y, and z.

Barycenter::~Barycenter ( )
inline

Destructor.

Definition at line 64 of file PDBbarycenter.hh.

View newest version in sPHENIX GitHub at line 64 of file PDBbarycenter.hh

Member Function Documentation

double Barycenter::GetDistance ( int  i)

Get the distance between atom i and nucleotide barycenter.

Definition at line 112 of file PDBbarycenter.cc.

View newest version in sPHENIX GitHub at line 112 of file PDBbarycenter.cc

References fDistanceTab.

int Barycenter::GetID ( )

Get the first.

Get number Barycenter

Definition at line 91 of file PDBbarycenter.cc.

View newest version in sPHENIX GitHub at line 91 of file PDBbarycenter.cc

References fBaryNum.

Barycenter * Barycenter::GetNext ( )

Get the next Barycenter.

Definition at line 86 of file PDBbarycenter.cc.

View newest version in sPHENIX GitHub at line 86 of file PDBbarycenter.cc

References fpNext.

Referenced by DetectorConstruction::BarycenterView(), PDBlib::ComputeMatchEdepDNA(), and DetectorConstruction::ResiduesView().

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double Barycenter::GetRadius ( )

Get the distance between the farther atom and nucleotide barycenter.

Definition at line 126 of file PDBbarycenter.cc.

View newest version in sPHENIX GitHub at line 126 of file PDBbarycenter.cc

References fRadius.

Referenced by DetectorConstruction::BarycenterView().

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void Barycenter::SetDistance ( int  i,
double  dist 
)

Set the distance between atom i and nucleotide barycenter.

Definition at line 105 of file PDBbarycenter.cc.

View newest version in sPHENIX GitHub at line 105 of file PDBbarycenter.cc

References fDistanceTab.

Referenced by PDBlib::ComputeNucleotideBarycenters().

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void Barycenter::SetNext ( Barycenter *  barycenterNext)

Set the next Barycenter.

Definition at line 98 of file PDBbarycenter.cc.

View newest version in sPHENIX GitHub at line 98 of file PDBbarycenter.cc

References fpNext.

Referenced by PDBlib::ComputeNucleotideBarycenters().

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void Barycenter::SetRadius ( double  rds)

Set the distance between the farther atom and nucleotide barycenter.

Definition at line 119 of file PDBbarycenter.cc.

View newest version in sPHENIX GitHub at line 119 of file PDBbarycenter.cc

References fRadius.

Referenced by PDBlib::ComputeNucleotideBarycenters().

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Member Data Documentation

int Barycenter::fBaryNum

Barycenter number.

Definition at line 83 of file PDBbarycenter.hh.

View newest version in sPHENIX GitHub at line 83 of file PDBbarycenter.hh

Referenced by Barycenter(), and GetID().

double Barycenter::fCenterBaseX

"X coordinate" of this Base Barycenter

Definition at line 91 of file PDBbarycenter.hh.

View newest version in sPHENIX GitHub at line 91 of file PDBbarycenter.hh

Referenced by Barycenter(), and DetectorConstruction::ResiduesView().

double Barycenter::fCenterBaseY

"Y coordinate" of this Base Barycenter

Definition at line 92 of file PDBbarycenter.hh.

View newest version in sPHENIX GitHub at line 92 of file PDBbarycenter.hh

Referenced by Barycenter(), and DetectorConstruction::ResiduesView().

double Barycenter::fCenterBaseZ

"Z coordinate" of this Base Barycenter

Definition at line 93 of file PDBbarycenter.hh.

View newest version in sPHENIX GitHub at line 93 of file PDBbarycenter.hh

Referenced by Barycenter(), and DetectorConstruction::ResiduesView().

double Barycenter::fCenterPhosphateX

"X coordinate" of this Phosphate Barycenter

Definition at line 99 of file PDBbarycenter.hh.

View newest version in sPHENIX GitHub at line 99 of file PDBbarycenter.hh

Referenced by Barycenter(), and DetectorConstruction::ResiduesView().

double Barycenter::fCenterPhosphateY

"Y coordinate" of this Phosphate Barycenter

Definition at line 100 of file PDBbarycenter.hh.

View newest version in sPHENIX GitHub at line 100 of file PDBbarycenter.hh

Referenced by Barycenter(), and DetectorConstruction::ResiduesView().

double Barycenter::fCenterPhosphateZ

"Z coordinate" of this Phosphate Barycenter

Definition at line 101 of file PDBbarycenter.hh.

View newest version in sPHENIX GitHub at line 101 of file PDBbarycenter.hh

Referenced by Barycenter(), and DetectorConstruction::ResiduesView().

double Barycenter::fCenterSugarX

"X coordinate" of this Sugar Barycenter

Definition at line 95 of file PDBbarycenter.hh.

View newest version in sPHENIX GitHub at line 95 of file PDBbarycenter.hh

Referenced by Barycenter(), and DetectorConstruction::ResiduesView().

double Barycenter::fCenterSugarY

"Y coordinate" of this Sugar Barycenter

Definition at line 96 of file PDBbarycenter.hh.

View newest version in sPHENIX GitHub at line 96 of file PDBbarycenter.hh

Referenced by Barycenter(), and DetectorConstruction::ResiduesView().

double Barycenter::fCenterSugarZ

"Z coordinate" of this Sugar Barycenter

Definition at line 97 of file PDBbarycenter.hh.

View newest version in sPHENIX GitHub at line 97 of file PDBbarycenter.hh

Referenced by Barycenter(), and DetectorConstruction::ResiduesView().

double Barycenter::fCenterX

"X coordinate" of this nucelotide Barycenter

Definition at line 87 of file PDBbarycenter.hh.

View newest version in sPHENIX GitHub at line 87 of file PDBbarycenter.hh

Referenced by Barycenter(), DetectorConstruction::BarycenterView(), PDBlib::ComputeMatchEdepDNA(), and PDBlib::ComputeNucleotideBarycenters().

double Barycenter::fCenterY

"Y coordinate" of this nucelotide Barycenter

Definition at line 88 of file PDBbarycenter.hh.

View newest version in sPHENIX GitHub at line 88 of file PDBbarycenter.hh

Referenced by Barycenter(), DetectorConstruction::BarycenterView(), PDBlib::ComputeMatchEdepDNA(), and PDBlib::ComputeNucleotideBarycenters().

double Barycenter::fCenterZ

"Z coordinate" of this nucelotide Barycenter

Definition at line 89 of file PDBbarycenter.hh.

View newest version in sPHENIX GitHub at line 89 of file PDBbarycenter.hh

Referenced by Barycenter(), DetectorConstruction::BarycenterView(), PDBlib::ComputeMatchEdepDNA(), and PDBlib::ComputeNucleotideBarycenters().

double Barycenter::fDistanceTab[33]

distance table [0..32] (11 hydrogens!)

Definition at line 84 of file PDBbarycenter.hh.

View newest version in sPHENIX GitHub at line 84 of file PDBbarycenter.hh

Referenced by Barycenter(), GetDistance(), and SetDistance().

Barycenter* Barycenter::fpNext
private

Header of the next Molecule (usage before vector)

Definition at line 104 of file PDBbarycenter.hh.

View newest version in sPHENIX GitHub at line 104 of file PDBbarycenter.hh

Referenced by Barycenter(), GetNext(), and SetNext().

double Barycenter::fRadius

Definition at line 85 of file PDBbarycenter.hh.

View newest version in sPHENIX GitHub at line 85 of file PDBbarycenter.hh

Referenced by Barycenter(), GetRadius(), and SetRadius().

The documentation for this class was generated from the following files: