DNAParser.hh

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//
// Authors: S. Meylan and C. Villagrasa (IRSN, France)
// Update: H. Tran (IRSN, France) :20/12/2018
//

#pragma once
#include <map>
#include "G4String.hh"
#include "G4ThreeVector.hh"
#include <memory>
#include <vector>
#include <unordered_map>
#include "DNAVolumeType.hh"
#include "G4MoleculeGun.hh"

class G4MoleculeGun;
class G4VPhysicalVolume;
class G4VSolid;
class G4Material;
class G4LogicalVolume;
class G4Orb;
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......

class DNAParser
{
public:
    using GeoData = std::unordered_map<const G4VPhysicalVolume*, 
                                       DNAVolumeType>;
    DNAParser();
    ~DNAParser();
    G4LogicalVolume* CreateLogicVolume();
    G4double GetVoxelSize();      
    
    std::unique_ptr<G4MoleculeGun> ReleaseMoleculeGun()
    {
        return std::move(fpGun);
    }
    
    GeoData ReleaseGeoData()
    {
        return std::move(fGeometryMap);
    }
    
    struct Molecule;
    
    void ParseFile(const std::string&);
private:
    G4double fSize;
    std::string fGeoName;
    std::map<G4String, G4double> fRadiusMap;
    std::map<G4String, G4double> fWaterRadiusMap;
    std::vector<Molecule> fMolecules;
    G4Material* fpWater;
    std::unique_ptr<G4MoleculeGun> fpGun;
    std::map<std::string, DNAVolumeType> fEnumMap;
    GeoData fGeometryMap;
    void EnumParser();
    G4VSolid* CreateCutSolid(G4Orb*,
                             Molecule&,
                             std::vector<Molecule>&,
                             G4bool);
};