DNAParser Class Reference

#include <geant4/tree/geant4-10.6-release/examples/extended/medical/dna/dnadamage1/include/DNAParser.hh>

Collaboration diagram for DNAParser:

Classes
struct	Molecule

Public Types
using	GeoData = std::unordered_map< const G4VPhysicalVolume *, DNAVolumeType >

Public Member Functions
	DNAParser ()
	~DNAParser ()
G4LogicalVolume *	CreateLogicVolume ()
G4double	GetVoxelSize ()
std::unique_ptr< G4MoleculeGun >	ReleaseMoleculeGun ()
GeoData	ReleaseGeoData ()
void	ParseFile (const std::string &)

Private Member Functions
void	EnumParser ()
G4VSolid *	CreateCutSolid (G4Orb *, Molecule &, std::vector< Molecule > &, G4bool)

Private Attributes
G4double	fSize
std::string	fGeoName
std::map< G4String, G4double >	fRadiusMap
std::map< G4String, G4double >	fWaterRadiusMap
std::vector< Molecule >	fMolecules
G4Material *	fpWater
std::unique_ptr< G4MoleculeGun >	fpGun
std::map< std::string, DNAVolumeType >	fEnumMap
GeoData	fGeometryMap

Detailed Description

Definition at line 48 of file DNAParser.hh.

View newest version in sPHENIX GitHub at line 48 of file DNAParser.hh

Member Typedef Documentation

using DNAParser::GeoData = std::unordered_map<const G4VPhysicalVolume*, DNAVolumeType>

Definition at line 52 of file DNAParser.hh.

View newest version in sPHENIX GitHub at line 52 of file DNAParser.hh

Constructor & Destructor Documentation

DNAParser::DNAParser

(

)

Definition at line 80 of file DNAParser.cc.

View newest version in sPHENIX GitHub at line 80 of file DNAParser.cc

References EnumParser().

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DNAParser::~DNAParser ( )

default

Member Function Documentation

G4VSolid * DNAParser::CreateCutSolid ( G4Orb *  pSolidOrbRef, Molecule &  molRef, std::vector< Molecule > &  molList, G4bool  in  )

private

Definition at line 397 of file DNAParser.cc.

View newest version in sPHENIX GitHub at line 397 of file DNAParser.cc

References kdfinder::abs(), d, FatalException, DNAParser::Molecule::fPosition, DNAParser::Molecule::fRadius, DNAParser::Molecule::fRadiusWater, fSize, G4Exception(), CLHEP::Hep3Vector::getR(), CLHEP::Hep3Vector::getX(), CLHEP::Hep3Vector::getY(), CLHEP::Hep3Vector::getZ(), G4Box::GetZHalfLength(), nm, phi, CLHEP::pi, pos(), CLHEP::HepRotation::rotate(), CLHEP::Hep3Vector::rotateZ(), theta(), CLHEP::Hep3Vector::x(), CLHEP::Hep3Vector::y(), and CLHEP::Hep3Vector::z().

Referenced by CreateLogicVolume().

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G4LogicalVolume * DNAParser::CreateLogicVolume

(

)

Definition at line 95 of file DNAParser.cc.

View newest version in sPHENIX GitHub at line 95 of file DNAParser.cc

References CreateCutSolid(), e, FatalException, fEnumMap, fGeometryMap, fGeoName, G4NistManager::FindOrBuildMaterial(), fMolecules, fpWater, fRadiusMap, fSize, fWaterRadiusMap, G4Exception(), G4NistManager::Instance(), it, nm, position, and radius.

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void DNAParser::EnumParser ( )

private

Definition at line 684 of file DNAParser.cc.

View newest version in sPHENIX GitHub at line 684 of file DNAParser.cc

References base_adenine, base_adenine_water, base_cytosine, base_cytosine_water, base_guanine, base_guanine_water, base_thymine, base_thymine_water, deoxyribose1, deoxyribose1_water, deoxyribose2, deoxyribose2_water, fEnumMap, histone, phosphate1, phosphate1_water, phosphate2, phosphate2_water, physWorld, and VoxelStraight.

Referenced by DNAParser().

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G4double DNAParser::GetVoxelSize

(

)

void DNAParser::ParseFile

(

const std::string &

fileName

)

Definition at line 257 of file DNAParser.cc.

View newest version in sPHENIX GitHub at line 257 of file DNAParser.cc

References base_adenine, base_cytosine, base_guanine, base_thymine, deoxyribose1, deoxyribose2, FatalException, fEnumMap, fGeoName, file, fMolecules, fpGun, fRadiusMap, fSize, fWaterRadiusMap, G4Exception(), histone, material(), molecule(), nm, phosphate1, phosphate2, picosecond, radius, x, y, and z.

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GeoData DNAParser::ReleaseGeoData ( )

inline

Definition at line 63 of file DNAParser.hh.

View newest version in sPHENIX GitHub at line 63 of file DNAParser.hh

References fGeometryMap.

std::unique_ptr<G4MoleculeGun> DNAParser::ReleaseMoleculeGun ( )

inline

Definition at line 58 of file DNAParser.hh.

View newest version in sPHENIX GitHub at line 58 of file DNAParser.hh

References fpGun.

Member Data Documentation

std::map<std::string, DNAVolumeType> DNAParser::fEnumMap

private

Definition at line 79 of file DNAParser.hh.

View newest version in sPHENIX GitHub at line 79 of file DNAParser.hh

Referenced by CreateLogicVolume(), EnumParser(), and ParseFile().

GeoData DNAParser::fGeometryMap

private

Definition at line 80 of file DNAParser.hh.

View newest version in sPHENIX GitHub at line 80 of file DNAParser.hh

Referenced by CreateLogicVolume(), and ReleaseGeoData().

std::string DNAParser::fGeoName

private

Definition at line 73 of file DNAParser.hh.

View newest version in sPHENIX GitHub at line 73 of file DNAParser.hh

Referenced by CreateLogicVolume(), and ParseFile().

std::vector<Molecule> DNAParser::fMolecules

private

Definition at line 76 of file DNAParser.hh.

View newest version in sPHENIX GitHub at line 76 of file DNAParser.hh

Referenced by CreateLogicVolume(), and ParseFile().

std::unique_ptr<G4MoleculeGun> DNAParser::fpGun

private

Definition at line 78 of file DNAParser.hh.

View newest version in sPHENIX GitHub at line 78 of file DNAParser.hh

Referenced by ParseFile(), and ReleaseMoleculeGun().

G4Material* DNAParser::fpWater

private

Definition at line 77 of file DNAParser.hh.

View newest version in sPHENIX GitHub at line 77 of file DNAParser.hh

Referenced by CreateLogicVolume().

std::map<G4String, G4double> DNAParser::fRadiusMap

private

Definition at line 74 of file DNAParser.hh.

View newest version in sPHENIX GitHub at line 74 of file DNAParser.hh

Referenced by CreateLogicVolume(), and ParseFile().

G4double DNAParser::fSize

private

Definition at line 72 of file DNAParser.hh.

View newest version in sPHENIX GitHub at line 72 of file DNAParser.hh

Referenced by CreateCutSolid(), CreateLogicVolume(), and ParseFile().

std::map<G4String, G4double> DNAParser::fWaterRadiusMap

private

Definition at line 75 of file DNAParser.hh.

View newest version in sPHENIX GitHub at line 75 of file DNAParser.hh

Referenced by CreateLogicVolume(), and ParseFile().

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The documentation for this class was generated from the following files:

• geant4/tree/geant4-10.6-release/examples/extended/medical/dna/dnadamage1/include/DNAParser.hh
• geant4/tree/geant4-10.6-release/examples/extended/medical/dna/dnadamage1/src/DNAParser.cc