#include <geant4/tree/geant4-10.6-release/source/processes/electromagnetic/dna/utils/include/G4DNAMolecularReactionTable.hh>

Inheritance diagram for G4DNAMolecularReactionTable:

Collaboration diagram for G4DNAMolecularReactionTable:

Public Types
using	Reactant = const G4MolecularConfiguration

using	Data = const G4DNAMolecularReactionData

using	ReactantList = std::vector< Reactant * >

using	DataList = std::vector< Data * >

using	SpecificDataList = std::map< Reactant , Data >

using	ReactionDataMap = std::map< Reactant *, SpecificDataList >

using	ReactivesMV = std::map< Reactant *, ReactantList >

using	ReactionDataMV = std::map< Reactant *, DataList >

Public Member Functions
virtual	~G4DNAMolecularReactionTable ()

void	SetReaction (G4double observedReactionRate, Reactant reactive1, Reactant reactive2)

void	SetReaction (G4DNAMolecularReactionData *)

Data *	GetReactionData (Reactant , Reactant ) const

Data *	GetReactionData (const G4String &, const G4String &) const

Data *	GetReaction (int reactionID) const

size_t	GetNReactions () const

const ReactantList *	CanReactWith (Reactant *) const

const SpecificDataList *	GetReativesNData (const G4MolecularConfiguration *) const

const DataList *	GetReactionData (const G4MolecularConfiguration *) const

const ReactionDataMap &	GetAllReactionData ()

DataList	GetVectorOfReactionData ()

void	ScaleReactionRateForNewTemperature (double temp_K)

void	PrintTable (G4VDNAReactionModel *=0)

Public Member Functions inherited from G4ITReactionTable
	G4ITReactionTable ()

virtual	~G4ITReactionTable ()

	G4ITReactionTable (const G4ITReactionTable &)

G4ITReactionTable &	operator= (const G4ITReactionTable &)

Static Public Member Functions
static G4DNAMolecularReactionTable *	GetReactionTable ()

static G4DNAMolecularReactionTable *	Instance ()

static void	DeleteInstance ()

Protected Member Functions
	G4DNAMolecularReactionTable ()

Protected Attributes
G4bool	fVerbose

ReactionDataMap	fReactionData

ReactivesMV	fReactantsMV

ReactionDataMV	fReactionDataMV

std::vector< std::unique_ptr < Data > >	fVectorOfReactionData

std::unique_ptr < G4ReactionTableMessenger >	fpMessenger

Static Protected Attributes
static G4DNAMolecularReactionTable *	fpInstance

Detailed Description

G4DNAMolecularReactionTable sorts out the G4DNAMolecularReactionData for bimolecular reaction

Definition at line 152 of file G4DNAMolecularReactionTable.hh.

View newest version in sPHENIX GitHub at line 152 of file G4DNAMolecularReactionTable.hh

Member Typedef Documentation

using G4DNAMolecularReactionTable::Data = const G4DNAMolecularReactionData

Definition at line 165 of file G4DNAMolecularReactionTable.hh.

View newest version in sPHENIX GitHub at line 165 of file G4DNAMolecularReactionTable.hh

using G4DNAMolecularReactionTable::DataList = std::vector<Data*>

Definition at line 167 of file G4DNAMolecularReactionTable.hh.

View newest version in sPHENIX GitHub at line 167 of file G4DNAMolecularReactionTable.hh

using G4DNAMolecularReactionTable::Reactant = const G4MolecularConfiguration

Definition at line 164 of file G4DNAMolecularReactionTable.hh.

View newest version in sPHENIX GitHub at line 164 of file G4DNAMolecularReactionTable.hh

using G4DNAMolecularReactionTable::ReactantList = std::vector<Reactant*>

Definition at line 166 of file G4DNAMolecularReactionTable.hh.

View newest version in sPHENIX GitHub at line 166 of file G4DNAMolecularReactionTable.hh

using G4DNAMolecularReactionTable::ReactionDataMap = std::map<Reactant*, SpecificDataList>

Definition at line 170 of file G4DNAMolecularReactionTable.hh.

View newest version in sPHENIX GitHub at line 170 of file G4DNAMolecularReactionTable.hh

using G4DNAMolecularReactionTable::ReactionDataMV = std::map<Reactant*, DataList>

Definition at line 172 of file G4DNAMolecularReactionTable.hh.

View newest version in sPHENIX GitHub at line 172 of file G4DNAMolecularReactionTable.hh

using G4DNAMolecularReactionTable::ReactivesMV = std::map<Reactant*, ReactantList>

Definition at line 171 of file G4DNAMolecularReactionTable.hh.

View newest version in sPHENIX GitHub at line 171 of file G4DNAMolecularReactionTable.hh

using G4DNAMolecularReactionTable::SpecificDataList = std::map<Reactant*, Data*>

Definition at line 168 of file G4DNAMolecularReactionTable.hh.

View newest version in sPHENIX GitHub at line 168 of file G4DNAMolecularReactionTable.hh

Constructor & Destructor Documentation

G4DNAMolecularReactionTable::G4DNAMolecularReactionTable ( )

protected

Definition at line 282 of file G4DNAMolecularReactionTable.cc.

View newest version in sPHENIX GitHub at line 282 of file G4DNAMolecularReactionTable.cc

Referenced by GetReactionTable(), and Instance().

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G4DNAMolecularReactionTable::~G4DNAMolecularReactionTable ( )

virtualdefault

Member Function Documentation

const G4DNAMolecularReactionTable::ReactantList * G4DNAMolecularReactionTable::CanReactWith ( Reactant * pMolecule ) const

Given a molecule's type, it returns with which a reaction is allowed

Definition at line 550 of file G4DNAMolecularReactionTable.cc.

View newest version in sPHENIX GitHub at line 550 of file G4DNAMolecularReactionTable.cc

References FatalErrorInArgument, fReactantsMV, fVerbose, G4cout, G4endl, G4Exception(), and G4MolecularConfiguration::GetName().

Referenced by G4DNAMoleculeEncounterStepper::CalculateStep(), and PrintTable().

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void G4DNAMolecularReactionTable::DeleteInstance ( )

static

Definition at line 271 of file G4DNAMolecularReactionTable.cc.

View newest version in sPHENIX GitHub at line 271 of file G4DNAMolecularReactionTable.cc

References fpInstance.

Referenced by G4DNAChemistryManager::Clear().

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const G4DNAMolecularReactionTable::ReactionDataMap & G4DNAMolecularReactionTable::GetAllReactionData ( )

Definition at line 530 of file G4DNAMolecularReactionTable.cc.

View newest version in sPHENIX GitHub at line 530 of file G4DNAMolecularReactionTable.cc

References fReactionData.

size_t G4DNAMolecularReactionTable::GetNReactions ( ) const

Definition at line 724 of file G4DNAMolecularReactionTable.cc.

View newest version in sPHENIX GitHub at line 724 of file G4DNAMolecularReactionTable.cc

References fVectorOfReactionData.

G4DNAMolecularReactionTable::Data * G4DNAMolecularReactionTable::GetReaction ( int reactionID ) const

Definition at line 712 of file G4DNAMolecularReactionTable.cc.

View newest version in sPHENIX GitHub at line 712 of file G4DNAMolecularReactionTable.cc

References fVectorOfReactionData.

G4DNAMolecularReactionTable::Data * G4DNAMolecularReactionTable::GetReactionData	(	Reactant *	pReactant1,
		Reactant *	pReactant2
	)		const

Definition at line 496 of file G4DNAMolecularReactionTable.cc.

View newest version in sPHENIX GitHub at line 496 of file G4DNAMolecularReactionTable.cc

References FatalErrorInArgument, fReactionData, G4cout, G4endl, G4Exception(), and G4MolecularConfiguration::GetName().

Referenced by GetReactionData(), G4DNASmoluchowskiReactionModel::GetReactionRadius(), G4DNASmoluchowskiReactionModel::Initialise(), G4DNASmoluchowskiReactionModel::InitialiseToPrint(), and G4DNAMolecularReaction::MakeReaction().

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G4DNAMolecularReactionTable::Data * G4DNAMolecularReactionTable::GetReactionData	(	const G4String &	mol1,
		const G4String &	mol2
	)		const

Definition at line 653 of file G4DNAMolecularReactionTable.cc.

View newest version in sPHENIX GitHub at line 653 of file G4DNAMolecularReactionTable.cc

References G4MoleculeTable::GetConfiguration(), G4MoleculeTable::GetMoleculeTable(), and GetReactionData().

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const G4DNAMolecularReactionTable::DataList * G4DNAMolecularReactionTable::GetReactionData ( const G4MolecularConfiguration * molecule ) const

Definition at line 631 of file G4DNAMolecularReactionTable.cc.

View newest version in sPHENIX GitHub at line 631 of file G4DNAMolecularReactionTable.cc

References FatalErrorInArgument, fReactionDataMV, G4Exception(), G4MolecularConfiguration::GetName(), and it.

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G4DNAMolecularReactionTable * G4DNAMolecularReactionTable::GetReactionTable ( )

static

Definition at line 249 of file G4DNAMolecularReactionTable.cc.

View newest version in sPHENIX GitHub at line 249 of file G4DNAMolecularReactionTable.cc

References fpInstance, and G4DNAMolecularReactionTable().

Referenced by G4DNAMolecularStepByStepModel::Initialize(), G4DNAChemistryManager::InitializeMaster(), and G4DNAChemistryManager::InitializeThread().

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const G4DNAMolecularReactionTable::SpecificDataList * G4DNAMolecularReactionTable::GetReativesNData ( const G4MolecularConfiguration * molecule ) const

Definition at line 596 of file G4DNAMolecularReactionTable.cc.

View newest version in sPHENIX GitHub at line 596 of file G4DNAMolecularReactionTable.cc

References FatalErrorInArgument, fReactionData, fVerbose, G4cout, G4endl, G4Exception(), and G4MolecularConfiguration::GetName().

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G4DNAMolecularReactionTable::DataList G4DNAMolecularReactionTable::GetVectorOfReactionData ( )

Definition at line 535 of file G4DNAMolecularReactionTable.cc.

View newest version in sPHENIX GitHub at line 535 of file G4DNAMolecularReactionTable.cc

References fVectorOfReactionData.

G4DNAMolecularReactionTable * G4DNAMolecularReactionTable::Instance ( void )

static

Definition at line 260 of file G4DNAMolecularReactionTable.cc.

View newest version in sPHENIX GitHub at line 260 of file G4DNAMolecularReactionTable.cc

References fpInstance, and G4DNAMolecularReactionTable().

Referenced by G4DNAChemistryManager::SetGlobalTemperature().

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void G4DNAMolecularReactionTable::PrintTable ( G4VDNAReactionModel * pReactionModel = 0 )

Definition at line 323 of file G4DNAMolecularReactionTable.cc.

View newest version in sPHENIX GitHub at line 323 of file G4DNAMolecularReactionTable.cc

References CanReactWith(), G4UIcommand::ConvertToString(), e, fReactantsMV, fReactionData, G4cout, G4endl, G4MolecularConfiguration::GetName(), G4DNAMolecularReactionData::GetNbProducts(), G4DNAMolecularReactionData::GetObservedReactionRateConstant(), G4DNAMolecularReactionData::GetProduct(), G4VDNAReactionModel::GetReactionRadius(), G4VDNAReactionModel::GetReactionTable(), G4VDNAReactionModel::InitialiseToPrint(), left, BTOF::length, m3, mole, n, nanometer, G4VDNAReactionModel::SetReactionTable(), title(), and TRUE.

Referenced by G4EmDNAChemistry::ConstructTimeStepModel(), G4EmDNAChemistry_option1::ConstructTimeStepModel(), G4EmDNAChemistry_option2::ConstructTimeStepModel(), and G4ReactionTableMessenger::SetNewValue().

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void G4DNAMolecularReactionTable::ScaleReactionRateForNewTemperature ( double temp_K )

Definition at line 691 of file G4DNAMolecularReactionTable.cc.

View newest version in sPHENIX GitHub at line 691 of file G4DNAMolecularReactionTable.cc

References fVectorOfReactionData.

Referenced by G4DNAChemistryManager::SetGlobalTemperature().

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void G4DNAMolecularReactionTable::SetReaction	(	G4double	observedReactionRate,
		Reactant *	reactive1,
		Reactant *	reactive2
	)

Define a reaction : First argument : reaction rate Second argument : reactant 1 Third argument : reactant 2 Fourth argument : a std::vector holding the molecular products if this last argument is NULL then it will be interpreted as a reaction giving no products

Definition at line 313 of file G4DNAMolecularReactionTable.cc.

View newest version in sPHENIX GitHub at line 313 of file G4DNAMolecularReactionTable.cc

Referenced by G4EmDNAChemistry::ConstructReactionTable(), G4EmDNAChemistry_option1::ConstructReactionTable(), G4EmDNAChemistry_option2::ConstructReactionTable(), and G4ReactionTableMessenger::SetNewValue().

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void G4DNAMolecularReactionTable::SetReaction ( G4DNAMolecularReactionData * pReactionData )

Definition at line 291 of file G4DNAMolecularReactionTable.cc.

View newest version in sPHENIX GitHub at line 291 of file G4DNAMolecularReactionTable.cc

References fReactantsMV, fReactionData, fReactionDataMV, fVectorOfReactionData, G4DNAMolecularReactionData::GetReactant1(), G4DNAMolecularReactionData::GetReactant2(), and G4DNAMolecularReactionData::SetReactionID().

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Member Data Documentation

G4DNAMolecularReactionTable * G4DNAMolecularReactionTable::fpInstance

staticprotected

Definition at line 156 of file G4DNAMolecularReactionTable.hh.

View newest version in sPHENIX GitHub at line 156 of file G4DNAMolecularReactionTable.hh

Referenced by DeleteInstance(), GetReactionTable(), and Instance().

std::unique_ptr<G4ReactionTableMessenger> G4DNAMolecularReactionTable::fpMessenger

protected

Definition at line 223 of file G4DNAMolecularReactionTable.hh.

View newest version in sPHENIX GitHub at line 223 of file G4DNAMolecularReactionTable.hh

ReactivesMV G4DNAMolecularReactionTable::fReactantsMV

protected

Definition at line 220 of file G4DNAMolecularReactionTable.hh.

View newest version in sPHENIX GitHub at line 220 of file G4DNAMolecularReactionTable.hh

Referenced by CanReactWith(), PrintTable(), and SetReaction().

ReactionDataMap G4DNAMolecularReactionTable::fReactionData

protected

Definition at line 219 of file G4DNAMolecularReactionTable.hh.

View newest version in sPHENIX GitHub at line 219 of file G4DNAMolecularReactionTable.hh

Referenced by GetAllReactionData(), GetReactionData(), GetReativesNData(), PrintTable(), and SetReaction().

ReactionDataMV G4DNAMolecularReactionTable::fReactionDataMV

protected

Definition at line 221 of file G4DNAMolecularReactionTable.hh.

View newest version in sPHENIX GitHub at line 221 of file G4DNAMolecularReactionTable.hh

Referenced by GetReactionData(), and SetReaction().

std::vector<std::unique_ptr<Data> > G4DNAMolecularReactionTable::fVectorOfReactionData

protected

Definition at line 222 of file G4DNAMolecularReactionTable.hh.

View newest version in sPHENIX GitHub at line 222 of file G4DNAMolecularReactionTable.hh

Referenced by GetNReactions(), GetReaction(), GetVectorOfReactionData(), ScaleReactionRateForNewTemperature(), and SetReaction().

G4bool G4DNAMolecularReactionTable::fVerbose

protected

Definition at line 217 of file G4DNAMolecularReactionTable.hh.

View newest version in sPHENIX GitHub at line 217 of file G4DNAMolecularReactionTable.hh

Referenced by CanReactWith(), and GetReativesNData().

The documentation for this class was generated from the following files:

geant4/tree/geant4-10.6-release/source/processes/electromagnetic/dna/utils/include/G4DNAMolecularReactionTable.hh
geant4/tree/geant4-10.6-release/source/processes/electromagnetic/dna/utils/src/G4DNAMolecularReactionTable.cc

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Protected Attributes

Static Protected Attributes

Detailed Description

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation