#include <geant4/tree/geant4-10.6-release/examples/extended/medical/dna/clustering/include/ClusteringAlgo.hh>

Collaboration diagram for ClusteringAlgo:

Public Member Functions
	ClusteringAlgo (G4double pEps, G4int pMinPts, G4double pSPointsProb, G4double pEMinDamage, G4double pEMaxDamage)

	~ClusteringAlgo ()

G4double	GetEps ()

void	SetEps (G4double val)

G4int	GetMinPts ()

void	SetMinPts (G4int val)

G4double	GetSPointsProb ()

void	SetSPointsProb (G4double val)

G4double	GetEMinDamage ()

void	SetEMinDamage (G4double val)

G4double	GetEMaxDamage ()

void	SetEMaxDamage (G4double val)

void	RegisterDamage (G4ThreeVector, G4double)

std::map< G4int, G4int >	RunClustering ()

void	Purge ()

G4int	GetSSB () const

G4int	GetComplexSSB () const

G4int	GetDSB () const

std::map< G4int, G4int >	GetClusterSizeDistribution ()

Private Member Functions
G4bool	IsInSensitiveArea ()

G4bool	IsEdepSufficient (G4double)

bool	FindCluster (SBPoint *pPt)

bool	AreOnTheSameCluster (G4ThreeVector, G4ThreeVector, G4double)

void	MergeClusters ()

void	IncludeUnassociatedPoints ()

Private Attributes
G4double	fEps

G4int	fMinPts

G4double	fSPointsProb

G4double	fEMinDamage

G4double	fEMaxDamage

std::vector< SBPoint * >	fpSetOfPoints

std::vector< ClusterSBPoints * >	fpClusters

unsigned int	fNextSBPointID

ClusteringAlgoMessenger *	fpClustAlgoMessenger

Detailed Description

Definition at line 48 of file ClusteringAlgo.hh.

View newest version in sPHENIX GitHub at line 48 of file ClusteringAlgo.hh

Constructor & Destructor Documentation

ClusteringAlgo::ClusteringAlgo	(	G4double	pEps,
		G4int	pMinPts,
		G4double	pSPointsProb,
		G4double	pEMinDamage,
		G4double	pEMaxDamage
	)

Definition at line 50 of file ClusteringAlgo.cc.

View newest version in sPHENIX GitHub at line 50 of file ClusteringAlgo.cc

References fNextSBPointID, and fpClustAlgoMessenger.

ClusteringAlgo::~ClusteringAlgo ( )

Definition at line 61 of file ClusteringAlgo.cc.

View newest version in sPHENIX GitHub at line 61 of file ClusteringAlgo.cc

References fpClustAlgoMessenger, and Purge().

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Member Function Documentation

bool ClusteringAlgo::AreOnTheSameCluster	(	G4ThreeVector	pPt1,
		G4ThreeVector	pPt2,
		G4double	pMinDist
	)

private

Definition at line 254 of file ClusteringAlgo.cc.

View newest version in sPHENIX GitHub at line 254 of file ClusteringAlgo.cc

References nm, CLHEP::Hep3Vector::x(), x1, x2, CLHEP::Hep3Vector::y(), y1, y2, CLHEP::Hep3Vector::z(), z1, and z2.

Referenced by MergeClusters(), and RunClustering().

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bool ClusteringAlgo::FindCluster ( SBPoint * pPt )

private

Definition at line 234 of file ClusteringAlgo.cc.

View newest version in sPHENIX GitHub at line 234 of file ClusteringAlgo.cc

References fEps, fpClusters, and SBPoint::HasCluster().

Referenced by IncludeUnassociatedPoints().

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map< G4int, G4int > ClusteringAlgo::GetClusterSizeDistribution ( )

Definition at line 332 of file ClusteringAlgo.cc.

View newest version in sPHENIX GitHub at line 332 of file ClusteringAlgo.cc

References fpClusters, and GetSSB().

Referenced by RunClustering().

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G4int ClusteringAlgo::GetComplexSSB ( ) const

Definition at line 296 of file ClusteringAlgo.cc.

View newest version in sPHENIX GitHub at line 296 of file ClusteringAlgo.cc

References fpClusters.

G4int ClusteringAlgo::GetDSB ( ) const

Definition at line 314 of file ClusteringAlgo.cc.

View newest version in sPHENIX GitHub at line 314 of file ClusteringAlgo.cc

References fpClusters.

G4double ClusteringAlgo::GetEMaxDamage ( )

inline

Definition at line 89 of file ClusteringAlgo.hh.

View newest version in sPHENIX GitHub at line 89 of file ClusteringAlgo.hh

References fEMaxDamage.

G4double ClusteringAlgo::GetEMinDamage ( )

inline

Definition at line 81 of file ClusteringAlgo.hh.

View newest version in sPHENIX GitHub at line 81 of file ClusteringAlgo.hh

References fEMinDamage.

G4double ClusteringAlgo::GetEps ( )

inline

Definition at line 57 of file ClusteringAlgo.hh.

View newest version in sPHENIX GitHub at line 57 of file ClusteringAlgo.hh

References fEps.

G4int ClusteringAlgo::GetMinPts ( )

inline

Definition at line 65 of file ClusteringAlgo.hh.

View newest version in sPHENIX GitHub at line 65 of file ClusteringAlgo.hh

References fMinPts.

G4double ClusteringAlgo::GetSPointsProb ( )

inline

Definition at line 73 of file ClusteringAlgo.hh.

View newest version in sPHENIX GitHub at line 73 of file ClusteringAlgo.hh

References fSPointsProb.

G4int ClusteringAlgo::GetSSB ( ) const

Definition at line 278 of file ClusteringAlgo.cc.

View newest version in sPHENIX GitHub at line 278 of file ClusteringAlgo.cc

References fpSetOfPoints.

Referenced by GetClusterSizeDistribution().

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void ClusteringAlgo::IncludeUnassociatedPoints ( )

private

Definition at line 215 of file ClusteringAlgo.cc.

View newest version in sPHENIX GitHub at line 215 of file ClusteringAlgo.cc

References FindCluster(), and fpSetOfPoints.

Referenced by RunClustering().

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G4bool ClusteringAlgo::IsEdepSufficient ( G4double pEdep )

private

Definition at line 78 of file ClusteringAlgo.cc.

View newest version in sPHENIX GitHub at line 78 of file ClusteringAlgo.cc

References eV, fEMaxDamage, fEMinDamage, and G4UniformRand.

Referenced by RegisterDamage().

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G4bool ClusteringAlgo::IsInSensitiveArea ( )

private

Definition at line 70 of file ClusteringAlgo.cc.

View newest version in sPHENIX GitHub at line 70 of file ClusteringAlgo.cc

References fSPointsProb, and G4UniformRand.

Referenced by RegisterDamage().

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void ClusteringAlgo::MergeClusters ( )

private

Definition at line 185 of file ClusteringAlgo.cc.

View newest version in sPHENIX GitHub at line 185 of file ClusteringAlgo.cc

References AreOnTheSameCluster(), fEps, and fpClusters.

Referenced by RunClustering().

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void ClusteringAlgo::Purge ( )

Definition at line 348 of file ClusteringAlgo.cc.

View newest version in sPHENIX GitHub at line 348 of file ClusteringAlgo.cc

References fNextSBPointID, fpClusters, and fpSetOfPoints.

Referenced by ~ClusteringAlgo().

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void ClusteringAlgo::RegisterDamage	(	G4ThreeVector	pPos,
		G4double	pEdep
	)

Definition at line 104 of file ClusteringAlgo.cc.

View newest version in sPHENIX GitHub at line 104 of file ClusteringAlgo.cc

References fNextSBPointID, fpSetOfPoints, IsEdepSufficient(), and IsInSensitiveArea().

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map< G4int, G4int > ClusteringAlgo::RunClustering ( )

Definition at line 117 of file ClusteringAlgo.cc.

View newest version in sPHENIX GitHub at line 117 of file ClusteringAlgo.cc

References AreOnTheSameCluster(), fEps, fpClusters, fpSetOfPoints, GetClusterSizeDistribution(), IncludeUnassociatedPoints(), and MergeClusters().

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void ClusteringAlgo::SetEMaxDamage ( G4double val )

inline

Definition at line 93 of file ClusteringAlgo.hh.

View newest version in sPHENIX GitHub at line 93 of file ClusteringAlgo.hh

References fEMaxDamage.

Referenced by ClusteringAlgoMessenger::SetNewValue().

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void ClusteringAlgo::SetEMinDamage ( G4double val )

inline

Definition at line 85 of file ClusteringAlgo.hh.

View newest version in sPHENIX GitHub at line 85 of file ClusteringAlgo.hh

References fEMinDamage.

Referenced by ClusteringAlgoMessenger::SetNewValue().

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void ClusteringAlgo::SetEps ( G4double val )

inline

Definition at line 61 of file ClusteringAlgo.hh.

View newest version in sPHENIX GitHub at line 61 of file ClusteringAlgo.hh

References fEps.

Referenced by ClusteringAlgoMessenger::SetNewValue().

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void ClusteringAlgo::SetMinPts ( G4int val )

inline

Definition at line 69 of file ClusteringAlgo.hh.

View newest version in sPHENIX GitHub at line 69 of file ClusteringAlgo.hh

References fMinPts.

Referenced by ClusteringAlgoMessenger::SetNewValue().

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void ClusteringAlgo::SetSPointsProb ( G4double val )

inline

Definition at line 77 of file ClusteringAlgo.hh.

View newest version in sPHENIX GitHub at line 77 of file ClusteringAlgo.hh

References fSPointsProb.

Referenced by ClusteringAlgoMessenger::SetNewValue().

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Member Data Documentation

G4double ClusteringAlgo::fEMaxDamage

private

Definition at line 137 of file ClusteringAlgo.hh.

View newest version in sPHENIX GitHub at line 137 of file ClusteringAlgo.hh

Referenced by GetEMaxDamage(), IsEdepSufficient(), and SetEMaxDamage().

G4double ClusteringAlgo::fEMinDamage

private

Definition at line 136 of file ClusteringAlgo.hh.

View newest version in sPHENIX GitHub at line 136 of file ClusteringAlgo.hh

Referenced by GetEMinDamage(), IsEdepSufficient(), and SetEMinDamage().

G4double ClusteringAlgo::fEps

private

Definition at line 133 of file ClusteringAlgo.hh.

View newest version in sPHENIX GitHub at line 133 of file ClusteringAlgo.hh

Referenced by FindCluster(), GetEps(), MergeClusters(), RunClustering(), and SetEps().

G4int ClusteringAlgo::fMinPts

private

Definition at line 134 of file ClusteringAlgo.hh.

View newest version in sPHENIX GitHub at line 134 of file ClusteringAlgo.hh

Referenced by GetMinPts(), and SetMinPts().

unsigned int ClusteringAlgo::fNextSBPointID

private

Definition at line 144 of file ClusteringAlgo.hh.

View newest version in sPHENIX GitHub at line 144 of file ClusteringAlgo.hh

Referenced by ClusteringAlgo(), Purge(), and RegisterDamage().

ClusteringAlgoMessenger* ClusteringAlgo::fpClustAlgoMessenger

private

Definition at line 146 of file ClusteringAlgo.hh.

View newest version in sPHENIX GitHub at line 146 of file ClusteringAlgo.hh

Referenced by ClusteringAlgo(), and ~ClusteringAlgo().

std::vector<ClusterSBPoints*> ClusteringAlgo::fpClusters

private

Definition at line 142 of file ClusteringAlgo.hh.

View newest version in sPHENIX GitHub at line 142 of file ClusteringAlgo.hh

Referenced by FindCluster(), GetClusterSizeDistribution(), GetComplexSSB(), GetDSB(), MergeClusters(), Purge(), and RunClustering().

std::vector<SBPoint*> ClusteringAlgo::fpSetOfPoints

private

Definition at line 140 of file ClusteringAlgo.hh.

View newest version in sPHENIX GitHub at line 140 of file ClusteringAlgo.hh

Referenced by GetSSB(), IncludeUnassociatedPoints(), Purge(), RegisterDamage(), and RunClustering().

G4double ClusteringAlgo::fSPointsProb

private

Definition at line 135 of file ClusteringAlgo.hh.

View newest version in sPHENIX GitHub at line 135 of file ClusteringAlgo.hh

Referenced by GetSPointsProb(), IsInSensitiveArea(), and SetSPointsProb().

The documentation for this class was generated from the following files:

geant4/tree/geant4-10.6-release/examples/extended/medical/dna/clustering/include/ClusteringAlgo.hh
geant4/tree/geant4-10.6-release/examples/extended/medical/dna/clustering/src/ClusteringAlgo.cc

Public Member Functions

Private Member Functions

Private Attributes

Detailed Description

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation