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G4DNABrownianTransportation Class Reference

#include <geant4/tree/geant4-10.6-release/source/processes/electromagnetic/dna/processes/include/G4DNABrownianTransportation.hh>

+ Inheritance diagram for G4DNABrownianTransportation:
+ Collaboration diagram for G4DNABrownianTransportation:

Classes

struct  G4ITBrownianState
 

Public Member Functions

 G4DNABrownianTransportation (const G4String &aName="DNABrownianTransportation", G4int verbosityLevel=0)
 
virtual ~G4DNABrownianTransportation ()
 
 G4DNABrownianTransportation (const G4DNABrownianTransportation &)
 
G4DNABrownianTransportation & operator= (const G4DNABrownianTransportation &)
 
void SetBrownianAction (G4BrownianAction *)
 
virtual void BuildPhysicsTable (const G4ParticleDefinition &)
 
virtual void StartTracking (G4Track *aTrack)
 
virtual void ComputeStep (const G4Track &, const G4Step &, const double, double &)
 
virtual G4double AlongStepGetPhysicalInteractionLength (const G4Track &, G4double, G4double, G4double &, G4GPILSelection *)
 
virtual G4VParticleChange * PostStepDoIt (const G4Track &track, const G4Step &)
 
virtual G4VParticleChange * AlongStepDoIt (const G4Track &track, const G4Step &)
 
void UseMaximumTimeBeforeReachingBoundary (bool flag=true)
 
void UseCumulativeDensitFunction (bool flag=true)
 
void UseLimitingTimeSteps (bool flag=true)
 
void SpeedLevel (int level)
 
- Public Member Functions inherited from G4ITTransportation
 G4ITTransportation (const G4String &aName="ITTransportation", G4int verbosityLevel=0)
 
virtual ~G4ITTransportation ()
 
 G4ITTransportation (const G4ITTransportation &)
 
G4bool IsStepLimitedByGeometry ()
 
virtual G4double AtRestGetPhysicalInteractionLength (const G4Track &, G4ForceCondition *)
 
virtual G4VParticleChange * AtRestDoIt (const G4Track &, const G4Step &)
 
virtual G4double PostStepGetPhysicalInteractionLength (const G4Track &, G4double, G4ForceCondition *pForceCond)
 
G4PropagatorInField * GetPropagatorInField ()
 
void SetPropagatorInField (G4PropagatorInField *pFieldPropagator)
 
void SetVerboseLevel (G4int verboseLevel)
 
G4int GetVerboseLevel () const
 
G4double GetThresholdWarningEnergy () const
 
G4double GetThresholdImportantEnergy () const
 
G4int GetThresholdTrials () const
 
void SetThresholdWarningEnergy (G4double newEnWarn)
 
void SetThresholdImportantEnergy (G4double newEnImp)
 
void SetThresholdTrials (G4int newMaxTrials)
 
G4double GetMaxEnergyKilled () const
 
G4double GetSumEnergyKilled () const
 
void ResetKilledStatistics (G4int report=1)
 
void EnableShortStepOptimisation (G4bool optimise=true)
 
- Public Member Functions inherited from G4VITProcess
 G4VITProcess (const G4String &name, G4ProcessType type=fNotDefined)
 
virtual ~G4VITProcess ()
 
 G4VITProcess (const G4VITProcess &other)
 
G4VITProcess & operator= (const G4VITProcess &other)
 
G4bool operator== (const G4VITProcess &right) const
 
G4bool operator!= (const G4VITProcess &right) const
 
size_t GetProcessID () const
 
G4shared_ptr< G4ProcessState_Lock > GetProcessState ()
 
void SetProcessState (G4shared_ptr< G4ProcessState_Lock > aProcInfo)
 
void ResetProcessState ()
 
G4double GetInteractionTimeLeft ()
 
virtual void ResetNumberOfInteractionLengthLeft ()
 
G4bool ProposesTimeStep () const
 
- Public Member Functions inherited from G4VProcess
 G4VProcess (const G4String &aName="NoName", G4ProcessType aType=fNotDefined)
 
 G4VProcess (const G4VProcess &right)
 
virtual ~G4VProcess ()
 
G4bool operator== (const G4VProcess &right) const
 
G4bool operator!= (const G4VProcess &right) const
 
G4double GetCurrentInteractionLength () const
 
void SetPILfactor (G4double value)
 
G4double GetPILfactor () const
 
G4double AlongStepGPIL (const G4Track &track, G4double previousStepSize, G4double currentMinimumStep, G4double &proposedSafety, G4GPILSelection *selection)
 
G4double AtRestGPIL (const G4Track &track, G4ForceCondition *condition)
 
G4double PostStepGPIL (const G4Track &track, G4double previousStepSize, G4ForceCondition *condition)
 
virtual G4bool IsApplicable (const G4ParticleDefinition &)
 
virtual void PreparePhysicsTable (const G4ParticleDefinition &)
 
virtual G4bool StorePhysicsTable (const G4ParticleDefinition *, const G4String &, G4bool)
 
virtual G4bool RetrievePhysicsTable (const G4ParticleDefinition *, const G4String &, G4bool)
 
const G4String & GetPhysicsTableFileName (const G4ParticleDefinition *, const G4String &directory, const G4String &tableName, G4bool ascii=false)
 
const G4String & GetProcessName () const
 
G4ProcessType GetProcessType () const
 
void SetProcessType (G4ProcessType)
 
G4int GetProcessSubType () const
 
void SetProcessSubType (G4int)
 
virtual void EndTracking ()
 
virtual void SetProcessManager (const G4ProcessManager *)
 
virtual const G4ProcessManager * GetProcessManager ()
 
G4double GetNumberOfInteractionLengthLeft () const
 
G4double GetTotalNumberOfInteractionLengthTraversed () const
 
G4bool isAtRestDoItIsEnabled () const
 
G4bool isAlongStepDoItIsEnabled () const
 
G4bool isPostStepDoItIsEnabled () const
 
virtual void DumpInfo () const
 
virtual void ProcessDescription (std::ostream &outfile) const
 
void SetVerboseLevel (G4int value)
 
G4int GetVerboseLevel () const
 
virtual void SetMasterProcess (G4VProcess *masterP)
 
const G4VProcess * GetMasterProcess () const
 
virtual void BuildWorkerPhysicsTable (const G4ParticleDefinition &part)
 
virtual void PrepareWorkerPhysicsTable (const G4ParticleDefinition &)
 

Protected Member Functions

G4double ComputeGeomLimit (const G4Track &track, G4double &presafety, G4double limit)
 
void Diffusion (const G4Track &track)
 
- Protected Member Functions inherited from G4ITTransportation
G4bool DoesGlobalFieldExist ()
 
void SetInstantiateProcessState (G4bool flag)
 
G4bool InstantiateProcessState ()
 
- Protected Member Functions inherited from G4VITProcess
void RetrieveProcessInfo ()
 
void CreateInfo ()
 
template<typename T >
T * GetState ()
 
virtual void SubtractNumberOfInteractionLengthLeft (G4double previousStepSize)
 
virtual void ClearInteractionTimeLeft ()
 
virtual void ClearNumberOfInteractionLengthLeft ()
 
void SetInstantiateProcessState (G4bool flag)
 
G4bool InstantiateProcessState ()
 
- Protected Member Functions inherited from G4VProcess
void SubtractNumberOfInteractionLengthLeft (G4double previousStepSize)
 
void ClearNumberOfInteractionLengthLeft ()
 

Protected Attributes

G4bool fUseMaximumTimeBeforeReachingBoundary
 
G4Material * fNistWater
 
G4bool fUseSchedulerMinTimeSteps
 
G4double fInternalMinTimeStep
 
G4bool fSpeedMeUp
 
const std::vector< G4double > * fpWaterDensity
 
G4BrownianAction * fpBrownianAction
 
- Protected Attributes inherited from G4ITTransportation
G4ITNavigator * fLinearNavigator
 
G4PropagatorInField * fFieldPropagator
 
G4ParticleChangeForTransport fParticleChange
 
G4double fThreshold_Warning_Energy
 
G4double fThreshold_Important_Energy
 
G4int fThresholdTrials
 
G4double fUnimportant_Energy
 
G4double fSumEnergyKilled
 
G4double fMaxEnergyKilled
 
G4bool fShortStepOptimisation
 
G4ITSafetyHelper * fpSafetyHelper
 
G4int fVerboseLevel
 
- Protected Attributes inherited from G4VITProcess
G4shared_ptr< G4ProcessState > fpState
 
G4bool fProposesTimeStep
 
- Protected Attributes inherited from G4VProcess
const G4ProcessManager * aProcessManager
 
G4VParticleChange * pParticleChange
 
G4ParticleChange aParticleChange
 
G4double theNumberOfInteractionLengthLeft
 
G4double currentInteractionLength
 
G4double theInitialNumberOfInteractionLength
 
G4String theProcessName
 
G4String thePhysicsTableFileName
 
G4ProcessType theProcessType
 
G4int theProcessSubType
 
G4double thePILfactor
 
G4bool enableAtRestDoIt
 
G4bool enableAlongStepDoIt
 
G4bool enablePostStepDoIt
 
G4int verboseLevel
 

Additional Inherited Members

- Static Public Member Functions inherited from G4VITProcess
static const size_t & GetMaxProcessIndex ()
 

Detailed Description

Definition at line 108 of file G4DNABrownianTransportation.hh.

View newest version in sPHENIX GitHub at line 108 of file G4DNABrownianTransportation.hh

Constructor & Destructor Documentation

G4DNABrownianTransportation::G4DNABrownianTransportation ( const G4String &  aName = "DNABrownianTransportation",
G4int  verbosityLevel = 0 
)

Definition at line 119 of file G4DNABrownianTransportation.cc.

View newest version in sPHENIX GitHub at line 119 of file G4DNABrownianTransportation.cc

References G4NistManager::FindOrBuildMaterial(), fInternalMinTimeStep, fNistWater, fpBrownianAction, G4VITProcess::fpState, fpWaterDensity, fSpeedMeUp, fUseMaximumTimeBeforeReachingBoundary, fUseSchedulerMinTimeSteps, G4ITTransportation::fVerboseLevel, G4NistManager::Instance(), picosecond, and G4VProcess::SetProcessSubType().

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G4DNABrownianTransportation::~G4DNABrownianTransportation ( )
virtual

Definition at line 142 of file G4DNABrownianTransportation.cc.

View newest version in sPHENIX GitHub at line 142 of file G4DNABrownianTransportation.cc

References fpBrownianAction.

G4DNABrownianTransportation::G4DNABrownianTransportation ( const G4DNABrownianTransportation &  right)

Definition at line 147 of file G4DNABrownianTransportation.cc.

View newest version in sPHENIX GitHub at line 147 of file G4DNABrownianTransportation.cc

References fInternalMinTimeStep, fNistWater, fpBrownianAction, fpWaterDensity, fSpeedMeUp, fUseMaximumTimeBeforeReachingBoundary, fUseSchedulerMinTimeSteps, and G4VProcess::SetProcessSubType().

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Member Function Documentation

G4VParticleChange * G4DNABrownianTransportation::AlongStepDoIt ( const G4Track &  track,
const G4Step &  step 
)
virtual

Reimplemented from G4ITTransportation.

Definition at line 802 of file G4DNABrownianTransportation.cc.

View newest version in sPHENIX GitHub at line 802 of file G4DNABrownianTransportation.cc

References G4ITTransportation::AlongStepDoIt(), DBL_MAX, Diffusion(), fInternalMinTimeStep, G4ITTransportation::fParticleChange, fUseSchedulerMinTimeSteps, G4ITTransportation::fVerboseLevel, G4cout, G4endl, GetIT(), GetMolecule(), G4Track::GetMomentumDirection(), G4Track::GetPosition(), G4Track::GetStepLength(), G4Track::GetTrackID(), GREEN_ON_BLUE, G4MemStat::MemoryUsage(), RESET_COLOR, G4INCL::DeJongSpin::shoot(), State, G4VITProcess::theInteractionTimeLeft, x, y, and z.

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G4double G4DNABrownianTransportation::AlongStepGetPhysicalInteractionLength ( const G4Track &  track,
G4double  previousStepSize,
G4double  currentMinimumStep,
G4double &  currentSafety,
G4GPILSelection *  selection 
)
virtual

Reimplemented from G4ITTransportation.

Definition at line 581 of file G4DNABrownianTransportation.cc.

View newest version in sPHENIX GitHub at line 581 of file G4DNABrownianTransportation.cc

References G4ITTransportation::AlongStepGetPhysicalInteractionLength(), DBL_MAX, fInternalMinTimeStep, G4ITTransportation::fLinearNavigator, fSpeedMeUp, fUseMaximumTimeBeforeReachingBoundary, fUseSchedulerMinTimeSteps, G4ITTransportation::fVerboseLevel, G4BestUnit, G4cout, G4endl, G4UniformRand, G4Molecule::GetDiffusionCoefficient(), G4Track::GetGlobalTime(), G4VScheduler::GetLimitingTimeStep(), GetMolecule(), G4Track::GetMomentumDirection(), G4VPhysicalVolume::GetName(), G4Track::GetPosition(), G4Track::GetTrackID(), G4VTouchable::GetVolume(), G4Track::GetVolume(), GREEN_ON_BLUE, G4VScheduler::Instance(), InvErf(), InvErfc(), RESET_COLOR, State, G4VITProcess::theInteractionTimeLeft, and G4VTouchable::UpdateYourself().

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void G4DNABrownianTransportation::BuildPhysicsTable ( const G4ParticleDefinition &  particle)
virtual

Reimplemented from G4ITTransportation.

Definition at line 187 of file G4DNABrownianTransportation.cc.

View newest version in sPHENIX GitHub at line 187 of file G4DNABrownianTransportation.cc

References G4ITTransportation::BuildPhysicsTable(), G4ITTransportation::fpSafetyHelper, fpWaterDensity, G4cout, G4endl, G4Material::GetMaterial(), G4ParticleDefinition::GetParticleName(), G4VProcess::GetProcessName(), G4VProcess::GetProcessSubType(), G4ITSafetyHelper::InitialiseHelper(), G4DNAMolecularMaterial::Instance(), and G4VProcess::verboseLevel.

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G4double G4DNABrownianTransportation::ComputeGeomLimit ( const G4Track &  track,
G4double &  presafety,
G4double  limit 
)
protected

Definition at line 562 of file G4DNABrownianTransportation.cc.

View newest version in sPHENIX GitHub at line 562 of file G4DNABrownianTransportation.cc

References G4ITSafetyHelper::CheckNextStep(), DBL_MAX, G4ITTransportation::fpSafetyHelper, GetIT(), G4Track::GetMomentumDirection(), G4StepPoint::GetPosition(), G4Step::GetPreStepPoint(), G4Track::GetStep(), G4IT::GetTrackingInfo(), G4TrackingInformation::GetTrackStateManager(), G4Track::GetVolume(), G4ITSafetyHelper::GetWorldVolume(), G4TrackStateDependent< T >::LoadTrackState(), and G4TrackStateDependent< T >::ResetTrackState().

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void G4DNABrownianTransportation::ComputeStep ( const G4Track &  track,
const G4Step &  step,
const double  timeStep,
double &  spaceStep 
)
virtual

Reimplemented from G4ITTransportation.

Definition at line 203 of file G4DNABrownianTransportation.cc.

View newest version in sPHENIX GitHub at line 203 of file G4DNABrownianTransportation.cc

References DBL_MAX, Erfc(), FatalErrorInArgument, fUseMaximumTimeBeforeReachingBoundary, fUseSchedulerMinTimeSteps, G4ITTransportation::fVerboseLevel, G4BestUnit, G4cout, G4endl, G4Exception(), G4UniformRand, G4Molecule::GetDiffusionCoefficient(), G4StepPoint::GetGlobalTime(), GetIT(), G4Track::GetMaterial(), GetMolecule(), G4Track::GetMomentumDirection(), G4Molecule::GetName(), G4Track::GetPosition(), G4Step::GetPostStepPoint(), G4Step::GetPreStepPoint(), G4StepPoint::GetProcessDefinedStep(), G4Material::GetTemperature(), G4Track::GetTrackID(), GREEN_ON_BLUE, InvErfc(), CLHEP::Hep3Vector::mag(), molecule(), G4VITProcess::ProposesTimeStep(), RESET_COLOR, G4INCL::DeJongSpin::shoot(), State, x, y, and z.

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void G4DNABrownianTransportation::Diffusion ( const G4Track &  track)
protected

Definition at line 474 of file G4DNABrownianTransportation.cc.

View newest version in sPHENIX GitHub at line 474 of file G4DNABrownianTransportation.cc

References G4ITTransportation::fParticleChange, fpBrownianAction, fStopAndKill, G4ITTransportation::fVerboseLevel, G4BestUnit, G4cout, G4endl, G4RandomDirection(), G4Track::GetCurrentStepNumber(), G4Track::GetGlobalTime(), G4Material::GetIndex(), GetIT(), G4Track::GetMaterial(), GetMolecule(), G4IT::GetName(), G4Molecule::GetName(), G4Track::GetTrackID(), GREEN_ON_BLUE, material(), G4MemStat::MemoryUsage(), G4ParticleChange::ProposeEnergy(), G4ParticleChange::ProposeMomentumDirection(), G4VParticleChange::ProposeTrackStatus(), RESET_COLOR, G4ParticleChangeForTransport::SetMomentumChanged(), State, and G4BrownianAction::Transport().

Referenced by AlongStepDoIt().

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G4DNABrownianTransportation & G4DNABrownianTransportation::operator= ( const G4DNABrownianTransportation &  rhs)

Definition at line 162 of file G4DNABrownianTransportation.cc.

View newest version in sPHENIX GitHub at line 162 of file G4DNABrownianTransportation.cc

G4VParticleChange * G4DNABrownianTransportation::PostStepDoIt ( const G4Track &  track,
const G4Step &  step 
)
virtual

Reimplemented from G4ITTransportation.

Definition at line 450 of file G4DNABrownianTransportation.cc.

View newest version in sPHENIX GitHub at line 450 of file G4DNABrownianTransportation.cc

References G4ITTransportation::fParticleChange, G4ITTransportation::fVerboseLevel, G4BestUnit, G4cout, G4endl, G4Step::GetDeltaTime(), G4Track::GetGlobalTime(), GetMolecule(), G4Molecule::GetName(), G4Step::GetStepLength(), G4Track::GetTrackID(), GREEN_ON_BLUE, G4ITTransportation::PostStepDoIt(), and RESET_COLOR.

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void G4DNABrownianTransportation::SetBrownianAction ( G4BrownianAction *  brownianAction)
inline

Definition at line 242 of file G4DNABrownianTransportation.hh.

View newest version in sPHENIX GitHub at line 242 of file G4DNABrownianTransportation.hh

References fpBrownianAction.

void G4DNABrownianTransportation::SpeedLevel ( int  level)
inline

Definition at line 171 of file G4DNABrownianTransportation.hh.

View newest version in sPHENIX GitHub at line 171 of file G4DNABrownianTransportation.hh

References fSpeedMeUp, and fUseSchedulerMinTimeSteps.

void G4DNABrownianTransportation::StartTracking ( G4Track *  aTrack)
virtual

Reimplemented from G4ITTransportation.

Definition at line 178 of file G4DNABrownianTransportation.cc.

View newest version in sPHENIX GitHub at line 178 of file G4DNABrownianTransportation.cc

References G4VITProcess::fpState, G4ITTransportation::SetInstantiateProcessState(), and G4ITTransportation::StartTracking().

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void G4DNABrownianTransportation::UseCumulativeDensitFunction ( bool  flag = true)
inline

Definition at line 155 of file G4DNABrownianTransportation.hh.

View newest version in sPHENIX GitHub at line 155 of file G4DNABrownianTransportation.hh

References fUseMaximumTimeBeforeReachingBoundary.

void G4DNABrownianTransportation::UseLimitingTimeSteps ( bool  flag = true)
inline

Definition at line 166 of file G4DNABrownianTransportation.hh.

View newest version in sPHENIX GitHub at line 166 of file G4DNABrownianTransportation.hh

References fUseSchedulerMinTimeSteps.

void G4DNABrownianTransportation::UseMaximumTimeBeforeReachingBoundary ( bool  flag = true)
inline

Definition at line 146 of file G4DNABrownianTransportation.hh.

View newest version in sPHENIX GitHub at line 146 of file G4DNABrownianTransportation.hh

References fUseMaximumTimeBeforeReachingBoundary.

Member Data Documentation

G4double G4DNABrownianTransportation::fInternalMinTimeStep
protected

Definition at line 232 of file G4DNABrownianTransportation.hh.

View newest version in sPHENIX GitHub at line 232 of file G4DNABrownianTransportation.hh

Referenced by AlongStepDoIt(), AlongStepGetPhysicalInteractionLength(), and G4DNABrownianTransportation().

G4Material* G4DNABrownianTransportation::fNistWater
protected

Definition at line 229 of file G4DNABrownianTransportation.hh.

View newest version in sPHENIX GitHub at line 229 of file G4DNABrownianTransportation.hh

Referenced by G4DNABrownianTransportation().

G4BrownianAction* G4DNABrownianTransportation::fpBrownianAction
protected

Definition at line 238 of file G4DNABrownianTransportation.hh.

View newest version in sPHENIX GitHub at line 238 of file G4DNABrownianTransportation.hh

Referenced by Diffusion(), G4DNABrownianTransportation(), SetBrownianAction(), and ~G4DNABrownianTransportation().

const std::vector<G4double>* G4DNABrownianTransportation::fpWaterDensity
protected

Definition at line 236 of file G4DNABrownianTransportation.hh.

View newest version in sPHENIX GitHub at line 236 of file G4DNABrownianTransportation.hh

Referenced by BuildPhysicsTable(), and G4DNABrownianTransportation().

G4bool G4DNABrownianTransportation::fSpeedMeUp
protected

Definition at line 233 of file G4DNABrownianTransportation.hh.

View newest version in sPHENIX GitHub at line 233 of file G4DNABrownianTransportation.hh

Referenced by AlongStepGetPhysicalInteractionLength(), G4DNABrownianTransportation(), and SpeedLevel().

G4bool G4DNABrownianTransportation::fUseMaximumTimeBeforeReachingBoundary
protected

Definition at line 228 of file G4DNABrownianTransportation.hh.

View newest version in sPHENIX GitHub at line 228 of file G4DNABrownianTransportation.hh

Referenced by AlongStepGetPhysicalInteractionLength(), ComputeStep(), G4DNABrownianTransportation(), UseCumulativeDensitFunction(), and UseMaximumTimeBeforeReachingBoundary().

G4bool G4DNABrownianTransportation::fUseSchedulerMinTimeSteps
protected

Definition at line 231 of file G4DNABrownianTransportation.hh.

View newest version in sPHENIX GitHub at line 231 of file G4DNABrownianTransportation.hh

Referenced by AlongStepDoIt(), AlongStepGetPhysicalInteractionLength(), ComputeStep(), G4DNABrownianTransportation(), SpeedLevel(), and UseLimitingTimeSteps().

The documentation for this class was generated from the following files: