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ScoreSpecies Class Reference

#include <geant4/tree/geant4-10.6-release/examples/extended/medical/dna/chem4/include/ScoreSpecies.hh>

+ Inheritance diagram for ScoreSpecies:
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Classes

struct  SpeciesInfo
 

Public Member Functions

 ScoreSpecies (G4String name, G4int depth=0)
 
virtual ~ScoreSpecies ()
 
void AddTimeToRecord (double time)
 
void ClearTimeToRecord ()
 
int GetNumberOfRecordedEvents () const
 
void ASCII ()
 
void WriteWithAnalysisManager (G4VAnalysisManager *)
 
virtual void Initialize (G4HCofThisEvent *)
 
virtual void EndOfEvent (G4HCofThisEvent *)
 
virtual void clear ()
 
virtual void DrawAll ()
 
virtual void PrintAll ()
 
virtual void AbsorbResultsFromWorkerScorer (G4VPrimitiveScorer *)
 
virtual void OutputAndClear ()
 
SpeciesMap GetSpeciesInfo ()
 
 ScoreSpecies (G4String name, G4int depth=0)
 
virtual ~ScoreSpecies ()
 
void AddTimeToRecord (double time)
 
void ClearTimeToRecord ()
 
int GetNumberOfRecordedEvents () const
 
void ASCII ()
 
virtual void Initialize (G4HCofThisEvent *)
 
virtual void EndOfEvent (G4HCofThisEvent *)
 
virtual void clear ()
 
virtual void DrawAll ()
 
virtual void PrintAll ()
 
virtual void AbsorbResultsFromWorkerScorer (G4VPrimitiveScorer *)
 
virtual void OutputAndClear ()
 
SpeciesMap GetSpeciesInfo ()
 
- Public Member Functions inherited from G4VPrimitiveScorer
 G4VPrimitiveScorer (G4String name, G4int depth=0)
 
virtual ~G4VPrimitiveScorer ()
 
G4int GetCollectionID (G4int)
 
void SetUnit (const G4String &unit)
 
const G4String & GetUnit () const
 
G4double GetUnitValue () const
 
void SetMultiFunctionalDetector (G4MultiFunctionalDetector *d)
 
G4MultiFunctionalDetector * GetMultiFunctionalDetector () const
 
G4String GetName () const
 
void SetFilter (G4VSDFilter *f)
 
G4VSDFilter * GetFilter () const
 
void SetVerboseLevel (G4int vl)
 
G4int GetVerboseLevel () const
 
void SetNijk (G4int i, G4int j, G4int k)
 

Protected Member Functions

virtual G4bool ProcessHits (G4Step *, G4TouchableHistory *)
 
virtual G4bool ProcessHits (G4Step *, G4TouchableHistory *)
 
- Protected Member Functions inherited from G4VPrimitiveScorer
virtual G4int GetIndex (G4Step *)
 
void CheckAndSetUnit (const G4String &unit, const G4String &category)
 

Private Types

typedef const
G4MolecularConfiguration 		Species
 
typedef std::map< Species
*, SpeciesInfo > 		InnerSpeciesMap
 
typedef std::map< double,
InnerSpeciesMap > 		SpeciesMap
 
typedef const
G4MolecularConfiguration 		Species
 
typedef std::map< Species
*, SpeciesInfo > 		InnerSpeciesMap
 
typedef std::map< double,
InnerSpeciesMap > 		SpeciesMap
 

Private Attributes

SpeciesMap fSpeciesInfoPerTime
 
std::set< G4double > fTimeToRecord
 
int fNEvent
 
double fEdep
 
G4bool fOutputToRoot
 
G4bool fOutputToXml
 
G4bool fOutputToCsv
 
G4int fHCID
 
G4THitsMap< G4double > * fEvtMap
 

Additional Inherited Members

- Protected Attributes inherited from G4VPrimitiveScorer
G4String primitiveName
 
G4MultiFunctionalDetector * detector
 
G4VSDFilter * filter
 
G4int verboseLevel
 
G4int indexDepth
 
G4String unitName
 
G4double unitValue
 
G4int fNi
 
G4int fNj
 
G4int fNk
 

Detailed Description

This is a primitive scorer class for molecular species. The number of species is recorded for all times (predetermined or user chosen). It also scores the energy deposition in order to compute the radiochemical yields.

This is a primitive scorer class for molecular species. The number of species is recorded for all times (log spaced). It also scores the energy deposition in order to compute the radiochemical yields.

Definition at line 55 of file ScoreSpecies.hh.

View newest version in sPHENIX GitHub at line 55 of file ScoreSpecies.hh

Member Typedef Documentation

typedef std::map<Species*, SpeciesInfo> ScoreSpecies::InnerSpeciesMap
private

Definition at line 111 of file ScoreSpecies.hh.

View newest version in sPHENIX GitHub at line 111 of file ScoreSpecies.hh

typedef std::map<Species*, SpeciesInfo> ScoreSpecies::InnerSpeciesMap
private

Definition at line 148 of file ScoreSpecies.hh.

View newest version in sPHENIX GitHub at line 148 of file ScoreSpecies.hh

typedef const G4MolecularConfiguration ScoreSpecies::Species
private

Definition at line 110 of file ScoreSpecies.hh.

View newest version in sPHENIX GitHub at line 110 of file ScoreSpecies.hh

typedef const G4MolecularConfiguration ScoreSpecies::Species
private

Definition at line 147 of file ScoreSpecies.hh.

View newest version in sPHENIX GitHub at line 147 of file ScoreSpecies.hh

typedef std::map<double, InnerSpeciesMap> ScoreSpecies::SpeciesMap
private

Definition at line 112 of file ScoreSpecies.hh.

View newest version in sPHENIX GitHub at line 112 of file ScoreSpecies.hh

typedef std::map<double, InnerSpeciesMap> ScoreSpecies::SpeciesMap
private

Definition at line 149 of file ScoreSpecies.hh.

View newest version in sPHENIX GitHub at line 149 of file ScoreSpecies.hh

Constructor & Destructor Documentation

ScoreSpecies::ScoreSpecies ( G4String  name,
G4int  depth = 0 
)

Definition at line 57 of file ScoreSpecies.cc.

View newest version in sPHENIX GitHub at line 57 of file ScoreSpecies.cc

References AddTimeToRecord(), fEdep, fNEvent, and CLHEP::picosecond.

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ScoreSpecies::~ScoreSpecies ( )
virtual

Definition at line 79 of file ScoreSpecies.cc.

View newest version in sPHENIX GitHub at line 79 of file ScoreSpecies.cc

ScoreSpecies::ScoreSpecies ( G4String  name,
G4int  depth = 0 
)
virtual ScoreSpecies::~ScoreSpecies ( )
virtual

Member Function Documentation

virtual void ScoreSpecies::AbsorbResultsFromWorkerScorer ( G4VPrimitiveScorer *  )
virtual

Method used in multithreading mode in order to merge the results

void ScoreSpecies::AbsorbResultsFromWorkerScorer ( G4VPrimitiveScorer *  workerScorer)
virtual

Method used in multithreading mode in order to merge the results

Definition at line 192 of file ScoreSpecies.cc.

View newest version in sPHENIX GitHub at line 192 of file ScoreSpecies.cc

References clear(), fEdep, ScoreSpecies::SpeciesInfo::fG, SpeciesInfoSOA::fG, ScoreSpecies::SpeciesInfo::fG2, fNEvent, ScoreSpecies::SpeciesInfo::fNumber, fSpeciesInfoPerTime, and right.

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void ScoreSpecies::AddTimeToRecord ( double  time)
inline

Add a time at which the number of species should be recorded. Default times are set up to 1 microsecond.

Definition at line 62 of file ScoreSpecies.hh.

View newest version in sPHENIX GitHub at line 62 of file ScoreSpecies.hh

References fTimeToRecord.

void ScoreSpecies::AddTimeToRecord ( double  time)
inline

Add a time at which the number of species should be recorded. Default times are set up to 1 microsecond.

Definition at line 64 of file ScoreSpecies.hh.

View newest version in sPHENIX GitHub at line 64 of file ScoreSpecies.hh

References fTimeToRecord.

Referenced by ScoreSpecies().

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void ScoreSpecies::ASCII ( )

Write results to an text file

void ScoreSpecies::ASCII ( )

Write results to an text file

Definition at line 313 of file ScoreSpecies.cc.

View newest version in sPHENIX GitHub at line 313 of file ScoreSpecies.cc

References fSpeciesInfoPerTime, and G4endl.

virtual void ScoreSpecies::clear ( )
virtual

Reimplemented from G4VPrimitiveScorer.

void ScoreSpecies::clear ( void  )
virtual

Reimplemented from G4VPrimitiveScorer.

Definition at line 279 of file ScoreSpecies.cc.

View newest version in sPHENIX GitHub at line 279 of file ScoreSpecies.cc

References G4VTHitsMap< T, Map_t >::clear(), fEdep, fEvtMap, fNEvent, and fSpeciesInfoPerTime.

Referenced by AbsorbResultsFromWorkerScorer().

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void ScoreSpecies::ClearTimeToRecord ( )
inline

Remove all times to record, must be reset by user.

Definition at line 68 of file ScoreSpecies.hh.

View newest version in sPHENIX GitHub at line 68 of file ScoreSpecies.hh

References fTimeToRecord.

void ScoreSpecies::ClearTimeToRecord ( )
inline

Remove all times to record, must be reset by user.

Definition at line 70 of file ScoreSpecies.hh.

View newest version in sPHENIX GitHub at line 70 of file ScoreSpecies.hh

References fTimeToRecord.

virtual void ScoreSpecies::DrawAll ( )
virtual

Reimplemented from G4VPrimitiveScorer.

void ScoreSpecies::DrawAll ( void  )
virtual

Reimplemented from G4VPrimitiveScorer.

Definition at line 289 of file ScoreSpecies.cc.

View newest version in sPHENIX GitHub at line 289 of file ScoreSpecies.cc

virtual void ScoreSpecies::EndOfEvent ( G4HCofThisEvent *  )
virtual

Reimplemented from G4VPrimitiveScorer.

void ScoreSpecies::EndOfEvent ( G4HCofThisEvent *  )
virtual

Reimplemented from G4VPrimitiveScorer.

Definition at line 115 of file ScoreSpecies.cc.

View newest version in sPHENIX GitHub at line 115 of file ScoreSpecies.cc

References eV, FatalException, fEdep, ScoreSpecies::SpeciesInfo::fG, SpeciesInfoSOA::fG, ScoreSpecies::SpeciesInfo::fG2, fNEvent, ScoreSpecies::SpeciesInfo::fNumber, fSpeciesInfoPerTime, fTimeToRecord, G4BestUnit, G4cerr, G4cout, G4endl, G4Exception(), G4EventManager::GetConstCurrentEvent(), G4Event::GetEventID(), G4EventManager::GetEventManager(), G4MoleculeCounter::GetNMoleculesAtTime(), G4MoleculeCounter::GetRecordedMolecules(), G4MoleculeCounter::Instance(), molecule(), and G4MoleculeCounter::ResetCounter().

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int ScoreSpecies::GetNumberOfRecordedEvents ( ) const
inline

Get number of recorded events

Definition at line 74 of file ScoreSpecies.hh.

View newest version in sPHENIX GitHub at line 74 of file ScoreSpecies.hh

References fNEvent.

int ScoreSpecies::GetNumberOfRecordedEvents ( ) const
inline

Get number of recorded events

Definition at line 76 of file ScoreSpecies.hh.

View newest version in sPHENIX GitHub at line 76 of file ScoreSpecies.hh

References fNEvent.

SpeciesMap ScoreSpecies::GetSpeciesInfo ( )
inline

Definition at line 134 of file ScoreSpecies.hh.

View newest version in sPHENIX GitHub at line 134 of file ScoreSpecies.hh

References fSpeciesInfoPerTime.

SpeciesMap ScoreSpecies::GetSpeciesInfo ( )
inline

Definition at line 180 of file ScoreSpecies.hh.

View newest version in sPHENIX GitHub at line 180 of file ScoreSpecies.hh

References fSpeciesInfoPerTime.

virtual void ScoreSpecies::Initialize ( G4HCofThisEvent *  )
virtual

Reimplemented from G4VPrimitiveScorer.

void ScoreSpecies::Initialize ( G4HCofThisEvent *  HCE)
virtual

Reimplemented from G4VPrimitiveScorer.

Definition at line 100 of file ScoreSpecies.cc.

View newest version in sPHENIX GitHub at line 100 of file ScoreSpecies.cc

References G4HCofThisEvent::AddHitsCollection(), fEvtMap, fHCID, G4VPrimitiveScorer::GetCollectionID(), G4VPrimitiveScorer::GetMultiFunctionalDetector(), G4VPrimitiveScorer::GetName(), and G4VSensitiveDetector::GetName().

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virtual void ScoreSpecies::OutputAndClear ( )
virtual
void ScoreSpecies::OutputAndClear ( )
virtual

Definition at line 338 of file ScoreSpecies.cc.

View newest version in sPHENIX GitHub at line 338 of file ScoreSpecies.cc

References fNEvent, fOutputToCsv, fOutputToRoot, fOutputToXml, fSpeciesInfoPerTime, G4Threading::IsWorkerThread(), G4Analysis::ManagerInstance(), and WriteWithAnalysisManager().

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virtual void ScoreSpecies::PrintAll ( )
virtual

Reimplemented from G4VPrimitiveScorer.

void ScoreSpecies::PrintAll ( void  )
virtual

Reimplemented from G4VPrimitiveScorer.

Definition at line 294 of file ScoreSpecies.cc.

View newest version in sPHENIX GitHub at line 294 of file ScoreSpecies.cc

References G4VPrimitiveScorer::detector, G4VTHitsMap< T, Map_t >::entries(), fEvtMap, fNEvent, G4cout, G4endl, G4VTHitsMap< T, Map_t >::GetMap(), G4VPrimitiveScorer::GetName(), G4VSensitiveDetector::GetName(), G4VPrimitiveScorer::GetUnit(), and G4VPrimitiveScorer::GetUnitValue().

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virtual G4bool ScoreSpecies::ProcessHits ( G4Step *  ,
G4TouchableHistory *   
)
protectedvirtual

Implements G4VPrimitiveScorer.

G4bool ScoreSpecies::ProcessHits ( G4Step *  aStep,
G4TouchableHistory *   
)
protectedvirtual

Implements G4VPrimitiveScorer.

Definition at line 84 of file ScoreSpecies.cc.

View newest version in sPHENIX GitHub at line 84 of file ScoreSpecies.cc

References G4VTHitsMap< T, Map_t >::add(), edep, FALSE, fEdep, fEvtMap, G4VPrimitiveScorer::GetIndex(), G4Step::GetPreStepPoint(), G4Step::GetTotalEnergyDeposit(), G4StepPoint::GetWeight(), and TRUE.

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void ScoreSpecies::WriteWithAnalysisManager ( G4VAnalysisManager *  analysisManager)

Write results to whatever chosen file format

Definition at line 373 of file ScoreSpecies.cc.

View newest version in sPHENIX GitHub at line 373 of file ScoreSpecies.cc

References G4VAnalysisManager::AddNtupleRow(), G4VAnalysisManager::CloseFile(), G4VAnalysisManager::CreateNtuple(), G4VAnalysisManager::CreateNtupleDColumn(), G4VAnalysisManager::CreateNtupleIColumn(), G4VAnalysisManager::CreateNtupleSColumn(), G4VAnalysisManager::FillNtupleDColumn(), G4VAnalysisManager::FillNtupleIColumn(), G4VAnalysisManager::FillNtupleSColumn(), G4VAnalysisManager::FinishNtuple(), G4String::first(), fNEvent, fSpeciesInfoPerTime, G, G4MolecularConfiguration::GetName(), G4VAnalysisManager::OpenFile(), Acts::VectorHelpers::time(), and G4VAnalysisManager::Write().

Referenced by OutputAndClear().

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Member Data Documentation

double ScoreSpecies::fEdep
private

Definition at line 161 of file ScoreSpecies.hh.

View newest version in sPHENIX GitHub at line 161 of file ScoreSpecies.hh

Referenced by AbsorbResultsFromWorkerScorer(), clear(), EndOfEvent(), ProcessHits(), and ScoreSpecies().

G4THitsMap< G4double > * ScoreSpecies::fEvtMap
private

Definition at line 184 of file ScoreSpecies.hh.

View newest version in sPHENIX GitHub at line 184 of file ScoreSpecies.hh

Referenced by clear(), Initialize(), PrintAll(), and ProcessHits().

G4int ScoreSpecies::fHCID
private

Definition at line 183 of file ScoreSpecies.hh.

View newest version in sPHENIX GitHub at line 183 of file ScoreSpecies.hh

Referenced by Initialize().

int ScoreSpecies::fNEvent
private

Definition at line 160 of file ScoreSpecies.hh.

View newest version in sPHENIX GitHub at line 160 of file ScoreSpecies.hh

Referenced by AbsorbResultsFromWorkerScorer(), clear(), EndOfEvent(), GetNumberOfRecordedEvents(), OutputAndClear(), PrintAll(), ScoreSpecies(), and WriteWithAnalysisManager().

G4bool ScoreSpecies::fOutputToCsv
private

Definition at line 164 of file ScoreSpecies.hh.

View newest version in sPHENIX GitHub at line 164 of file ScoreSpecies.hh

Referenced by OutputAndClear().

G4bool ScoreSpecies::fOutputToRoot
private

Definition at line 162 of file ScoreSpecies.hh.

View newest version in sPHENIX GitHub at line 162 of file ScoreSpecies.hh

Referenced by OutputAndClear().

G4bool ScoreSpecies::fOutputToXml
private

Definition at line 163 of file ScoreSpecies.hh.

View newest version in sPHENIX GitHub at line 163 of file ScoreSpecies.hh

Referenced by OutputAndClear().

SpeciesMap ScoreSpecies::fSpeciesInfoPerTime
private

Definition at line 150 of file ScoreSpecies.hh.

View newest version in sPHENIX GitHub at line 150 of file ScoreSpecies.hh

Referenced by AbsorbResultsFromWorkerScorer(), ASCII(), clear(), EndOfEvent(), GetSpeciesInfo(), OutputAndClear(), and WriteWithAnalysisManager().

std::set< G4double > ScoreSpecies::fTimeToRecord
private

Definition at line 158 of file ScoreSpecies.hh.

View newest version in sPHENIX GitHub at line 158 of file ScoreSpecies.hh

Referenced by AddTimeToRecord(), ClearTimeToRecord(), and EndOfEvent().

The documentation for this class was generated from the following files: