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NeuronLoadDataFile Class Reference

#include <geant4/tree/geant4-10.6-release/examples/extended/medical/dna/neuron/include/NeuronLoadDataFile.hh>

+ Collaboration diagram for NeuronLoadDataFile:

Public Member Functions

 NeuronLoadDataFile ()
 
virtual ~NeuronLoadDataFile ()
 
void SingleNeuronSWCfile (const G4String &filename)
 
void NeuralNetworkDATAfile (const G4String &filename)
 
void ComputeTransformation (const G4int copyNo, G4VPhysicalVolume *physVol) const
 
void ComputeDimensions (G4Tubs &cylinderComp, const G4int copyNo, const G4VPhysicalVolume *) const
 
void ComputeDimensions (G4Sphere &, const G4int, const G4VPhysicalVolume *) const
 
void ComputeDimensions (G4Ellipsoid &, const G4int, const G4VPhysicalVolume *) const
 
void ComputeDimensions (G4Box &, const G4int, const G4VPhysicalVolume *) const
 
void ComputeDimensions (G4Cons &, const G4int, const G4VPhysicalVolume *) const
 
void ComputeDimensions (G4Hype &, const G4int, const G4VPhysicalVolume *) const
 
void ComputeDimensions (G4Trd &, const G4int, const G4VPhysicalVolume *) const
 
void ComputeDimensions (G4Trap &, const G4int, const G4VPhysicalVolume *) const
 
void ComputeDimensions (G4Orb &, const G4int, const G4VPhysicalVolume *) const
 
void ComputeDimensions (G4Torus &, const G4int, const G4VPhysicalVolume *) const
 
void ComputeDimensions (G4Para &, const G4int, const G4VPhysicalVolume *) const
 
void ComputeDimensions (G4Polycone &, const G4int, const G4VPhysicalVolume *) const
 
void ComputeDimensions (G4Polyhedra &, const G4int, const G4VPhysicalVolume *) const
 
G4double GetwidthB ()
 
G4double GetheightB ()
 
G4double GetdepthB ()
 
G4double GetdiagnlLength ()
 
G4double GetshiftX ()
 
G4double GetshiftY ()
 
G4double GetshiftZ ()
 
G4double GetTypeN (G4int i)
 
G4int GetnbSomacomp ()
 
G4double GetMassSomacomp (G4int i)
 
G4double GetMassSomaTot ()
 
G4ThreeVector GetPosSomacomp (G4int i)
 
G4double GetRadSomacomp (G4int i)
 
G4int GetnbDendritecomp ()
 
G4double GetMassDendcomp (G4int i)
 
G4double GetMassDendTot ()
 
G4ThreeVector GetPosDendcomp (G4int i)
 
G4double GetRadDendcomp (G4int i)
 
G4double GetHeightDendcomp (G4int i)
 
G4double GetDistADendSoma (G4int i)
 
G4double GetDistBDendSoma (G4int i)
 
G4RotationMatrix GetRotDendcomp (G4int i)
 
G4int GetnbAxoncomp ()
 
G4double GetMassAxoncomp (G4int i)
 
G4double GetMassAxonTot ()
 
G4ThreeVector GetPosAxoncomp (G4int i)
 
G4double GetRadAxoncomp (G4int i)
 
G4double GetHeightAxoncomp (G4int i)
 
G4double GetDistAxonsoma (G4int i)
 
G4RotationMatrix GetRotAxoncomp (G4int i)
 
G4int GetnbSpinecomp ()
 
G4double GetMassSpinecomp (G4int i)
 
G4double GetMassSpineTot ()
 
G4ThreeVector GetPosSpinecomp (G4int i)
 
G4double GetRadSpinecomp (G4int i)
 
G4double GetHeightSpinecomp (G4int i)
 
G4double GetDistSpinesoma (G4int i)
 
G4RotationMatrix GetRotSpinecomp (G4int i)
 
G4int GetnbNeuroncomp ()
 
G4double GetTotVolNeuron ()
 
G4double GetTotSurfNeuron ()
 
G4double GetTotMassNeuron ()
 
G4double GetTotVolSlice ()
 
G4double GetTotSurfSlice ()
 
G4double GetTotMassSlice ()
 
G4double GetTotVolMedium ()
 
G4double GetTotSurfMedium ()
 
G4double GetTotMassMedium ()
 
G4VisAttributes GetSomaColour ()
 
G4VisAttributes GetDendColour ()
 
G4VisAttributes GetAxonColour ()
 
G4VisAttributes GetSpineColour ()
 
G4VisAttributes GetNeuronColour ()
 

Private Attributes

G4String fNeuronFileNameSWC
 NEURON filename.
 
G4String fNeuronFileNameDATA
 
G4int fnbSomacomp
 
G4int fnbDendritecomp
 
G4int fnbAxoncomp
 
G4int fnbSpinecomp
 
G4int fnbNeuroncomp
 
G4int * fnNn
 
G4int * fpNn
 
G4int * fnNd
 
G4int * fpNd
 
G4int * fnNa
 
G4int * fpNa
 
G4int * fTypeN
 
G4double fshiftX
 
G4double fshiftY
 
G4double fshiftZ
 
G4double fwidthB
 
G4double fheightB
 
G4double fdepthB
 
G4double fdiagnlLength
 
G4ThreeVector * fPosSomacomp
 
G4double * fRadSomacomp
 
G4double * fMassSomacomp
 
G4double fMassSomaTot
 
G4double * fRadDendcomp
 
G4double * fDistADendSoma
 
G4double * fDistBDendSoma
 
G4double * fHeightDendcomp
 
G4double * fMassDendcomp
 
G4double fMassDendTot
 
G4ThreeVector * fPosDendcomp
 
G4RotationMatrix * fRotDendcomp
 
G4double * fRadAxoncomp
 
G4double * fHeightAxoncomp
 
G4double * fDistAxonsoma
 
G4double * fMassAxoncomp
 
G4double fMassAxonTot
 
G4ThreeVector * fPosAxoncomp
 
G4RotationMatrix * fRotAxoncomp
 
G4double * fRadSpinecomp
 
G4double * fHeightSpinecomp
 
G4double * fDistSpinesoma
 
G4double * fMassSpinecomp
 
G4double fMassSpineTot
 
G4ThreeVector * fPosSpinecomp
 
G4RotationMatrix * fRotSpinecomp
 
G4double * fRadNeuroncomp
 
G4double * fHeightNeuroncomp
 
G4double * fDistNeuronsoma
 
G4double * fMassNeuroncomp
 
G4ThreeVector * fPosNeuroncomp
 
G4RotationMatrix * fRotNeuroncomp
 
G4double fTotVolNeuron
 
G4double fTotSurfNeuron
 
G4double fTotMassNeuron
 
G4double fTotVolSlice
 
G4double fTotSurfSlice
 
G4double fTotMassSlice
 
G4double fTotVolMedium
 
G4double fTotSurfMedium
 
G4double fTotMassMedium
 
G4VisAttributes * fSomaColour
 
G4VisAttributes * fDendColour
 
G4VisAttributes * fAxonColour
 
G4VisAttributes * fSpineColour
 
G4VisAttributes * fNeuronColour
 

Detailed Description

Definition at line 79 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 79 of file NeuronLoadDataFile.hh

Constructor & Destructor Documentation

NeuronLoadDataFile::NeuronLoadDataFile ( )

Definition at line 76 of file NeuronLoadDataFile.cc.

View newest version in sPHENIX GitHub at line 76 of file NeuronLoadDataFile.cc

References G4DNAPARSER::Command::GetOption().

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NeuronLoadDataFile::~NeuronLoadDataFile ( )
virtual

Definition at line 851 of file NeuronLoadDataFile.cc.

View newest version in sPHENIX GitHub at line 851 of file NeuronLoadDataFile.cc

Member Function Documentation

void NeuronLoadDataFile::ComputeDimensions ( G4Tubs &  cylinderComp,
const G4int  copyNo,
const G4VPhysicalVolume *   
) const

Definition at line 952 of file NeuronLoadDataFile.cc.

View newest version in sPHENIX GitHub at line 952 of file NeuronLoadDataFile.cc

References deg, G4Tubs::SetDeltaPhiAngle(), G4Tubs::SetInnerRadius(), G4Tubs::SetOuterRadius(), G4Tubs::SetStartPhiAngle(), G4Tubs::SetZHalfLength(), and um.

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void NeuronLoadDataFile::ComputeDimensions ( G4Sphere &  ,
const G4int  ,
const G4VPhysicalVolume *   
) const
inline

Definition at line 104 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 104 of file NeuronLoadDataFile.hh

void NeuronLoadDataFile::ComputeDimensions ( G4Ellipsoid &  ,
const G4int  ,
const G4VPhysicalVolume *   
) const
inline

Definition at line 106 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 106 of file NeuronLoadDataFile.hh

void NeuronLoadDataFile::ComputeDimensions ( G4Box &  ,
const G4int  ,
const G4VPhysicalVolume *   
) const
inline

Definition at line 108 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 108 of file NeuronLoadDataFile.hh

void NeuronLoadDataFile::ComputeDimensions ( G4Cons &  ,
const G4int  ,
const G4VPhysicalVolume *   
) const
inline

Definition at line 110 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 110 of file NeuronLoadDataFile.hh

void NeuronLoadDataFile::ComputeDimensions ( G4Hype &  ,
const G4int  ,
const G4VPhysicalVolume *   
) const
inline

Definition at line 112 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 112 of file NeuronLoadDataFile.hh

void NeuronLoadDataFile::ComputeDimensions ( G4Trd &  ,
const G4int  ,
const G4VPhysicalVolume *   
) const
inline

Definition at line 115 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 115 of file NeuronLoadDataFile.hh

void NeuronLoadDataFile::ComputeDimensions ( G4Trap &  ,
const G4int  ,
const G4VPhysicalVolume *   
) const
inline

Definition at line 118 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 118 of file NeuronLoadDataFile.hh

void NeuronLoadDataFile::ComputeDimensions ( G4Orb &  ,
const G4int  ,
const G4VPhysicalVolume *   
) const
inline

Definition at line 121 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 121 of file NeuronLoadDataFile.hh

void NeuronLoadDataFile::ComputeDimensions ( G4Torus &  ,
const G4int  ,
const G4VPhysicalVolume *   
) const
inline

Definition at line 124 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 124 of file NeuronLoadDataFile.hh

void NeuronLoadDataFile::ComputeDimensions ( G4Para &  ,
const G4int  ,
const G4VPhysicalVolume *   
) const
inline

Definition at line 127 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 127 of file NeuronLoadDataFile.hh

void NeuronLoadDataFile::ComputeDimensions ( G4Polycone &  ,
const G4int  ,
const G4VPhysicalVolume *   
) const
inline

Definition at line 130 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 130 of file NeuronLoadDataFile.hh

void NeuronLoadDataFile::ComputeDimensions ( G4Polyhedra &  ,
const G4int  ,
const G4VPhysicalVolume *   
) const
inline

Definition at line 133 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 133 of file NeuronLoadDataFile.hh

void NeuronLoadDataFile::ComputeTransformation ( const G4int  copyNo,
G4VPhysicalVolume *  physVol 
) const

Definition at line 880 of file NeuronLoadDataFile.cc.

View newest version in sPHENIX GitHub at line 880 of file NeuronLoadDataFile.cc

References FLT_EPSILON, CLHEP::HepRotation::rotateX(), CLHEP::HepRotation::rotateY(), CLHEP::HepRotation::rotateZ(), G4VPhysicalVolume::SetRotation(), G4VPhysicalVolume::SetTranslation(), um, x, CLHEP::HepRotation::xx(), y, CLHEP::HepRotation::yx(), CLHEP::HepRotation::yy(), CLHEP::HepRotation::yz(), z, CLHEP::HepRotation::zx(), CLHEP::HepRotation::zy(), and CLHEP::HepRotation::zz().

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G4VisAttributes NeuronLoadDataFile::GetAxonColour ( )
inline

Definition at line 194 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 194 of file NeuronLoadDataFile.hh

References fAxonColour.

G4VisAttributes NeuronLoadDataFile::GetDendColour ( )
inline

Definition at line 193 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 193 of file NeuronLoadDataFile.hh

References fDendColour.

G4double NeuronLoadDataFile::GetdepthB ( )
inline

Definition at line 139 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 139 of file NeuronLoadDataFile.hh

References fdepthB.

G4double NeuronLoadDataFile::GetdiagnlLength ( )
inline

Definition at line 140 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 140 of file NeuronLoadDataFile.hh

References fdiagnlLength.

G4double NeuronLoadDataFile::GetDistADendSoma ( G4int  i)
inline

Definition at line 158 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 158 of file NeuronLoadDataFile.hh

References fDistADendSoma.

G4double NeuronLoadDataFile::GetDistAxonsoma ( G4int  i)
inline

Definition at line 168 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 168 of file NeuronLoadDataFile.hh

References fDistAxonsoma.

G4double NeuronLoadDataFile::GetDistBDendSoma ( G4int  i)
inline

Definition at line 159 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 159 of file NeuronLoadDataFile.hh

References fDistBDendSoma.

G4double NeuronLoadDataFile::GetDistSpinesoma ( G4int  i)
inline

Definition at line 177 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 177 of file NeuronLoadDataFile.hh

References fDistSpinesoma.

G4double NeuronLoadDataFile::GetHeightAxoncomp ( G4int  i)
inline

Definition at line 167 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 167 of file NeuronLoadDataFile.hh

References fHeightAxoncomp.

G4double NeuronLoadDataFile::GetheightB ( )
inline

Definition at line 138 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 138 of file NeuronLoadDataFile.hh

References fheightB.

G4double NeuronLoadDataFile::GetHeightDendcomp ( G4int  i)
inline

Definition at line 157 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 157 of file NeuronLoadDataFile.hh

References fHeightDendcomp.

G4double NeuronLoadDataFile::GetHeightSpinecomp ( G4int  i)
inline

Definition at line 176 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 176 of file NeuronLoadDataFile.hh

References fHeightSpinecomp.

G4double NeuronLoadDataFile::GetMassAxoncomp ( G4int  i)
inline

Definition at line 163 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 163 of file NeuronLoadDataFile.hh

References fMassAxoncomp.

G4double NeuronLoadDataFile::GetMassAxonTot ( )
inline

Definition at line 164 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 164 of file NeuronLoadDataFile.hh

References fMassAxonTot.

G4double NeuronLoadDataFile::GetMassDendcomp ( G4int  i)
inline

Definition at line 153 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 153 of file NeuronLoadDataFile.hh

References fMassDendcomp.

G4double NeuronLoadDataFile::GetMassDendTot ( )
inline

Definition at line 154 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 154 of file NeuronLoadDataFile.hh

References fMassDendTot.

G4double NeuronLoadDataFile::GetMassSomacomp ( G4int  i)
inline

Definition at line 147 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 147 of file NeuronLoadDataFile.hh

References fMassSomacomp.

G4double NeuronLoadDataFile::GetMassSomaTot ( )
inline

Definition at line 148 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 148 of file NeuronLoadDataFile.hh

References fMassSomaTot.

G4double NeuronLoadDataFile::GetMassSpinecomp ( G4int  i)
inline

Definition at line 172 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 172 of file NeuronLoadDataFile.hh

References fMassSpinecomp.

G4double NeuronLoadDataFile::GetMassSpineTot ( )
inline

Definition at line 173 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 173 of file NeuronLoadDataFile.hh

References fMassSpineTot.

G4int NeuronLoadDataFile::GetnbAxoncomp ( )
inline

Definition at line 162 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 162 of file NeuronLoadDataFile.hh

References fnbAxoncomp.

G4int NeuronLoadDataFile::GetnbDendritecomp ( )
inline

Definition at line 152 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 152 of file NeuronLoadDataFile.hh

References fnbDendritecomp.

G4int NeuronLoadDataFile::GetnbNeuroncomp ( )
inline

Definition at line 180 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 180 of file NeuronLoadDataFile.hh

References fnbNeuroncomp.

G4int NeuronLoadDataFile::GetnbSomacomp ( )
inline

Definition at line 146 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 146 of file NeuronLoadDataFile.hh

References fnbSomacomp.

G4int NeuronLoadDataFile::GetnbSpinecomp ( )
inline

Definition at line 171 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 171 of file NeuronLoadDataFile.hh

References fnbSpinecomp.

G4VisAttributes NeuronLoadDataFile::GetNeuronColour ( )
inline

Definition at line 196 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 196 of file NeuronLoadDataFile.hh

References fNeuronColour.

G4ThreeVector NeuronLoadDataFile::GetPosAxoncomp ( G4int  i)
inline

Definition at line 165 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 165 of file NeuronLoadDataFile.hh

References fPosAxoncomp.

G4ThreeVector NeuronLoadDataFile::GetPosDendcomp ( G4int  i)
inline

Definition at line 155 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 155 of file NeuronLoadDataFile.hh

References fPosDendcomp.

G4ThreeVector NeuronLoadDataFile::GetPosSomacomp ( G4int  i)
inline

Definition at line 149 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 149 of file NeuronLoadDataFile.hh

References fPosSomacomp.

G4ThreeVector NeuronLoadDataFile::GetPosSpinecomp ( G4int  i)
inline

Definition at line 174 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 174 of file NeuronLoadDataFile.hh

References fPosSpinecomp.

G4double NeuronLoadDataFile::GetRadAxoncomp ( G4int  i)
inline

Definition at line 166 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 166 of file NeuronLoadDataFile.hh

References fRadAxoncomp.

G4double NeuronLoadDataFile::GetRadDendcomp ( G4int  i)
inline

Definition at line 156 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 156 of file NeuronLoadDataFile.hh

References fRadDendcomp.

G4double NeuronLoadDataFile::GetRadSomacomp ( G4int  i)
inline

Definition at line 150 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 150 of file NeuronLoadDataFile.hh

References fRadSomacomp.

G4double NeuronLoadDataFile::GetRadSpinecomp ( G4int  i)
inline

Definition at line 175 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 175 of file NeuronLoadDataFile.hh

References fRadSpinecomp.

G4RotationMatrix NeuronLoadDataFile::GetRotAxoncomp ( G4int  i)
inline

Definition at line 169 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 169 of file NeuronLoadDataFile.hh

References fRotAxoncomp.

G4RotationMatrix NeuronLoadDataFile::GetRotDendcomp ( G4int  i)
inline

Definition at line 160 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 160 of file NeuronLoadDataFile.hh

References fRotDendcomp.

G4RotationMatrix NeuronLoadDataFile::GetRotSpinecomp ( G4int  i)
inline

Definition at line 178 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 178 of file NeuronLoadDataFile.hh

References fRotSpinecomp.

G4double NeuronLoadDataFile::GetshiftX ( )
inline

Definition at line 141 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 141 of file NeuronLoadDataFile.hh

References fshiftX.

G4double NeuronLoadDataFile::GetshiftY ( )
inline

Definition at line 142 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 142 of file NeuronLoadDataFile.hh

References fshiftY.

G4double NeuronLoadDataFile::GetshiftZ ( )
inline

Definition at line 143 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 143 of file NeuronLoadDataFile.hh

References fshiftZ.

G4VisAttributes NeuronLoadDataFile::GetSomaColour ( )
inline

Definition at line 192 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 192 of file NeuronLoadDataFile.hh

References fSomaColour.

G4VisAttributes NeuronLoadDataFile::GetSpineColour ( )
inline

Definition at line 195 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 195 of file NeuronLoadDataFile.hh

References fSpineColour.

G4double NeuronLoadDataFile::GetTotMassMedium ( )
inline

Definition at line 190 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 190 of file NeuronLoadDataFile.hh

References fTotMassMedium.

G4double NeuronLoadDataFile::GetTotMassNeuron ( )
inline

Definition at line 184 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 184 of file NeuronLoadDataFile.hh

References fTotMassNeuron.

G4double NeuronLoadDataFile::GetTotMassSlice ( )
inline

Definition at line 187 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 187 of file NeuronLoadDataFile.hh

References fTotMassSlice.

G4double NeuronLoadDataFile::GetTotSurfMedium ( )
inline

Definition at line 189 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 189 of file NeuronLoadDataFile.hh

References fTotSurfMedium.

G4double NeuronLoadDataFile::GetTotSurfNeuron ( )
inline

Definition at line 183 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 183 of file NeuronLoadDataFile.hh

References fTotSurfNeuron.

G4double NeuronLoadDataFile::GetTotSurfSlice ( )
inline

Definition at line 186 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 186 of file NeuronLoadDataFile.hh

References fTotSurfSlice.

G4double NeuronLoadDataFile::GetTotVolMedium ( )
inline

Definition at line 188 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 188 of file NeuronLoadDataFile.hh

References fTotVolMedium.

G4double NeuronLoadDataFile::GetTotVolNeuron ( )
inline

Definition at line 182 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 182 of file NeuronLoadDataFile.hh

References fTotVolNeuron.

G4double NeuronLoadDataFile::GetTotVolSlice ( )
inline

Definition at line 185 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 185 of file NeuronLoadDataFile.hh

References fTotVolSlice.

G4double NeuronLoadDataFile::GetTypeN ( G4int  i)
inline

Definition at line 144 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 144 of file NeuronLoadDataFile.hh

References fTypeN.

G4double NeuronLoadDataFile::GetwidthB ( )
inline

Definition at line 137 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 137 of file NeuronLoadDataFile.hh

References fwidthB.

void NeuronLoadDataFile::NeuralNetworkDATAfile ( const G4String &  filename)

Definition at line 659 of file NeuronLoadDataFile.cc.

View newest version in sPHENIX GitHub at line 659 of file NeuronLoadDataFile.cc

References cm3, e, g4zmq::exit(), Acts::UnitConstants::g, G4cout, G4endl, CLHEP::HepRotation::inverse(), nlines, CLHEP::Hep3Vector::phi(), pi, radius, CLHEP::Hep3Vector::theta(), um, x1, x2, y1, y2, z1, and z2.

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void NeuronLoadDataFile::SingleNeuronSWCfile ( const G4String &  filename)

Definition at line 115 of file NeuronLoadDataFile.cc.

View newest version in sPHENIX GitHub at line 115 of file NeuronLoadDataFile.cc

References cm3, e, g4zmq::exit(), Acts::UnitConstants::g, G4cout, G4endl, CLHEP::HepRotation::inverse(), maxY, maxZ, minY, nlines, CLHEP::Hep3Vector::phi(), pi, radius, G4VisAttributes::SetColour(), CLHEP::Hep3Vector::theta(), um, CLHEP::Hep3Vector::x(), x, CLHEP::Hep3Vector::y(), y, CLHEP::Hep3Vector::z(), and z.

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Member Data Documentation

G4VisAttributes* NeuronLoadDataFile::fAxonColour
private

Definition at line 275 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 275 of file NeuronLoadDataFile.hh

Referenced by GetAxonColour().

G4VisAttributes* NeuronLoadDataFile::fDendColour
private

Definition at line 274 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 274 of file NeuronLoadDataFile.hh

Referenced by GetDendColour().

G4double NeuronLoadDataFile::fdepthB
private

Definition at line 222 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 222 of file NeuronLoadDataFile.hh

Referenced by GetdepthB().

G4double NeuronLoadDataFile::fdiagnlLength
private

Definition at line 223 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 223 of file NeuronLoadDataFile.hh

Referenced by GetdiagnlLength().

G4double* NeuronLoadDataFile::fDistADendSoma
private

Definition at line 231 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 231 of file NeuronLoadDataFile.hh

Referenced by GetDistADendSoma().

G4double* NeuronLoadDataFile::fDistAxonsoma
private

Definition at line 241 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 241 of file NeuronLoadDataFile.hh

Referenced by GetDistAxonsoma().

G4double* NeuronLoadDataFile::fDistBDendSoma
private

Definition at line 232 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 232 of file NeuronLoadDataFile.hh

Referenced by GetDistBDendSoma().

G4double* NeuronLoadDataFile::fDistNeuronsoma
private

Definition at line 257 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 257 of file NeuronLoadDataFile.hh

G4double* NeuronLoadDataFile::fDistSpinesoma
private

Definition at line 249 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 249 of file NeuronLoadDataFile.hh

Referenced by GetDistSpinesoma().

G4double* NeuronLoadDataFile::fHeightAxoncomp
private

Definition at line 240 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 240 of file NeuronLoadDataFile.hh

Referenced by GetHeightAxoncomp().

G4double NeuronLoadDataFile::fheightB
private

Definition at line 221 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 221 of file NeuronLoadDataFile.hh

Referenced by GetheightB().

G4double* NeuronLoadDataFile::fHeightDendcomp
private

Definition at line 233 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 233 of file NeuronLoadDataFile.hh

Referenced by GetHeightDendcomp().

G4double* NeuronLoadDataFile::fHeightNeuroncomp
private

Definition at line 256 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 256 of file NeuronLoadDataFile.hh

G4double* NeuronLoadDataFile::fHeightSpinecomp
private

Definition at line 248 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 248 of file NeuronLoadDataFile.hh

Referenced by GetHeightSpinecomp().

G4double* NeuronLoadDataFile::fMassAxoncomp
private

Definition at line 242 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 242 of file NeuronLoadDataFile.hh

Referenced by GetMassAxoncomp().

G4double NeuronLoadDataFile::fMassAxonTot
private

Definition at line 243 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 243 of file NeuronLoadDataFile.hh

Referenced by GetMassAxonTot().

G4double* NeuronLoadDataFile::fMassDendcomp
private

Definition at line 234 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 234 of file NeuronLoadDataFile.hh

Referenced by GetMassDendcomp().

G4double NeuronLoadDataFile::fMassDendTot
private

Definition at line 235 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 235 of file NeuronLoadDataFile.hh

Referenced by GetMassDendTot().

G4double* NeuronLoadDataFile::fMassNeuroncomp
private

Definition at line 258 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 258 of file NeuronLoadDataFile.hh

G4double* NeuronLoadDataFile::fMassSomacomp
private

Definition at line 227 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 227 of file NeuronLoadDataFile.hh

Referenced by GetMassSomacomp().

G4double NeuronLoadDataFile::fMassSomaTot
private

Definition at line 228 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 228 of file NeuronLoadDataFile.hh

Referenced by GetMassSomaTot().

G4double* NeuronLoadDataFile::fMassSpinecomp
private

Definition at line 250 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 250 of file NeuronLoadDataFile.hh

Referenced by GetMassSpinecomp().

G4double NeuronLoadDataFile::fMassSpineTot
private

Definition at line 251 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 251 of file NeuronLoadDataFile.hh

Referenced by GetMassSpineTot().

G4int NeuronLoadDataFile::fnbAxoncomp
private

Definition at line 206 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 206 of file NeuronLoadDataFile.hh

Referenced by GetnbAxoncomp().

G4int NeuronLoadDataFile::fnbDendritecomp
private

Definition at line 205 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 205 of file NeuronLoadDataFile.hh

Referenced by GetnbDendritecomp().

G4int NeuronLoadDataFile::fnbNeuroncomp
private

Definition at line 208 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 208 of file NeuronLoadDataFile.hh

Referenced by GetnbNeuroncomp().

G4int NeuronLoadDataFile::fnbSomacomp
private

Definition at line 204 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 204 of file NeuronLoadDataFile.hh

Referenced by GetnbSomacomp().

G4int NeuronLoadDataFile::fnbSpinecomp
private

Definition at line 207 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 207 of file NeuronLoadDataFile.hh

Referenced by GetnbSpinecomp().

G4VisAttributes* NeuronLoadDataFile::fNeuronColour
private

Definition at line 277 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 277 of file NeuronLoadDataFile.hh

Referenced by GetNeuronColour().

G4String NeuronLoadDataFile::fNeuronFileNameDATA
private

Definition at line 202 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 202 of file NeuronLoadDataFile.hh

G4String NeuronLoadDataFile::fNeuronFileNameSWC
private

NEURON filename.

Definition at line 201 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 201 of file NeuronLoadDataFile.hh

G4int* NeuronLoadDataFile::fnNa
private

Definition at line 215 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 215 of file NeuronLoadDataFile.hh

G4int* NeuronLoadDataFile::fnNd
private

Definition at line 213 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 213 of file NeuronLoadDataFile.hh

G4int* NeuronLoadDataFile::fnNn
private

Definition at line 210 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 210 of file NeuronLoadDataFile.hh

G4int* NeuronLoadDataFile::fpNa
private

Definition at line 216 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 216 of file NeuronLoadDataFile.hh

G4int* NeuronLoadDataFile::fpNd
private

Definition at line 214 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 214 of file NeuronLoadDataFile.hh

G4int* NeuronLoadDataFile::fpNn
private

Definition at line 211 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 211 of file NeuronLoadDataFile.hh

G4ThreeVector* NeuronLoadDataFile::fPosAxoncomp
private

Definition at line 244 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 244 of file NeuronLoadDataFile.hh

Referenced by GetPosAxoncomp().

G4ThreeVector* NeuronLoadDataFile::fPosDendcomp
private

Definition at line 236 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 236 of file NeuronLoadDataFile.hh

Referenced by GetPosDendcomp().

G4ThreeVector* NeuronLoadDataFile::fPosNeuroncomp
private

Definition at line 260 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 260 of file NeuronLoadDataFile.hh

G4ThreeVector* NeuronLoadDataFile::fPosSomacomp
private

Definition at line 225 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 225 of file NeuronLoadDataFile.hh

Referenced by GetPosSomacomp().

G4ThreeVector* NeuronLoadDataFile::fPosSpinecomp
private

Definition at line 252 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 252 of file NeuronLoadDataFile.hh

Referenced by GetPosSpinecomp().

G4double* NeuronLoadDataFile::fRadAxoncomp
private

Definition at line 239 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 239 of file NeuronLoadDataFile.hh

Referenced by GetRadAxoncomp().

G4double* NeuronLoadDataFile::fRadDendcomp
private

Definition at line 230 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 230 of file NeuronLoadDataFile.hh

Referenced by GetRadDendcomp().

G4double* NeuronLoadDataFile::fRadNeuroncomp
private

Definition at line 255 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 255 of file NeuronLoadDataFile.hh

G4double* NeuronLoadDataFile::fRadSomacomp
private

Definition at line 226 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 226 of file NeuronLoadDataFile.hh

Referenced by GetRadSomacomp().

G4double* NeuronLoadDataFile::fRadSpinecomp
private

Definition at line 247 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 247 of file NeuronLoadDataFile.hh

Referenced by GetRadSpinecomp().

G4RotationMatrix* NeuronLoadDataFile::fRotAxoncomp
private

Definition at line 245 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 245 of file NeuronLoadDataFile.hh

Referenced by GetRotAxoncomp().

G4RotationMatrix* NeuronLoadDataFile::fRotDendcomp
private

Definition at line 237 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 237 of file NeuronLoadDataFile.hh

Referenced by GetRotDendcomp().

G4RotationMatrix* NeuronLoadDataFile::fRotNeuroncomp
private

Definition at line 261 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 261 of file NeuronLoadDataFile.hh

G4RotationMatrix* NeuronLoadDataFile::fRotSpinecomp
private

Definition at line 253 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 253 of file NeuronLoadDataFile.hh

Referenced by GetRotSpinecomp().

G4double NeuronLoadDataFile::fshiftX
private

Definition at line 219 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 219 of file NeuronLoadDataFile.hh

Referenced by GetshiftX().

G4double NeuronLoadDataFile::fshiftY
private

Definition at line 219 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 219 of file NeuronLoadDataFile.hh

Referenced by GetshiftY().

G4double NeuronLoadDataFile::fshiftZ
private

Definition at line 219 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 219 of file NeuronLoadDataFile.hh

Referenced by GetshiftZ().

G4VisAttributes* NeuronLoadDataFile::fSomaColour
private

Definition at line 273 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 273 of file NeuronLoadDataFile.hh

Referenced by GetSomaColour().

G4VisAttributes* NeuronLoadDataFile::fSpineColour
private

Definition at line 276 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 276 of file NeuronLoadDataFile.hh

Referenced by GetSpineColour().

G4double NeuronLoadDataFile::fTotMassMedium
private

Definition at line 271 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 271 of file NeuronLoadDataFile.hh

Referenced by GetTotMassMedium().

G4double NeuronLoadDataFile::fTotMassNeuron
private

Definition at line 265 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 265 of file NeuronLoadDataFile.hh

Referenced by GetTotMassNeuron().

G4double NeuronLoadDataFile::fTotMassSlice
private

Definition at line 268 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 268 of file NeuronLoadDataFile.hh

Referenced by GetTotMassSlice().

G4double NeuronLoadDataFile::fTotSurfMedium
private

Definition at line 270 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 270 of file NeuronLoadDataFile.hh

Referenced by GetTotSurfMedium().

G4double NeuronLoadDataFile::fTotSurfNeuron
private

Definition at line 264 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 264 of file NeuronLoadDataFile.hh

Referenced by GetTotSurfNeuron().

G4double NeuronLoadDataFile::fTotSurfSlice
private

Definition at line 267 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 267 of file NeuronLoadDataFile.hh

Referenced by GetTotSurfSlice().

G4double NeuronLoadDataFile::fTotVolMedium
private

Definition at line 269 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 269 of file NeuronLoadDataFile.hh

Referenced by GetTotVolMedium().

G4double NeuronLoadDataFile::fTotVolNeuron
private

Definition at line 263 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 263 of file NeuronLoadDataFile.hh

Referenced by GetTotVolNeuron().

G4double NeuronLoadDataFile::fTotVolSlice
private

Definition at line 266 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 266 of file NeuronLoadDataFile.hh

Referenced by GetTotVolSlice().

G4int* NeuronLoadDataFile::fTypeN
private

Definition at line 217 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 217 of file NeuronLoadDataFile.hh

Referenced by GetTypeN().

G4double NeuronLoadDataFile::fwidthB
private

Definition at line 220 of file NeuronLoadDataFile.hh.

View newest version in sPHENIX GitHub at line 220 of file NeuronLoadDataFile.hh

Referenced by GetwidthB().

The documentation for this class was generated from the following files: